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Growth hormone (GH) constitutes a set of closely related protein isoforms. In clinical practice, the disagreement of test results between commercially available ligand-binding assays is still an ongoing issue, and incomplete knowledge about…

Quantitative Methods · Quantitative Biology 2014-11-12 Cristian G. Arsene , Jürgen Kratzsch , André Henrion

Amphiphilic peptide conjugation affords a significant increase in sensitivity with protein quantification by electrospray-ionization mass spectrometry. This has been demonstrated here for human growth hormone in serum using…

Quantitative Methods · Quantitative Biology 2012-12-06 Cristian G. Arsene , Dirk Schulze , Jürgen Kratzsch , André Henrion

Optical interferometry is amongst the most sensitive techniques for precision measurement. By increasing the light intensity a more precise measurement can usually be made. However, in some applications the sample is light sensitive. By…

A method is presented for determining second virial coefficients B_2 of protein solutions from retention time measurements in size exclusion chromatography (SEC). We determine B_2 by analyzing the concentration dependance of the…

Soft Condensed Matter · Physics 2009-11-10 J. Bloustine , V. Berejnov , S. Fraden

The structure of proteins is essential for its function. The determination of protein structures is possible by experimental or predicted by computational methods, but also a combination of both approaches is possible. Here, first an…

Other Quantitative Biology · Quantitative Biology 2020-03-03 Gerhard Mayer

We propose a novel approach to detect the binding between proteins making use of the anomalous diffraction of natively present heavy elements inside the molecule 3D structure. In particular, we suggest considering sulfur atoms contained in…

Mass spectrometry provides a high-throughput way to identify proteins in biological samples. In a typical experiment, proteins in a sample are first broken into their constituent peptides. The resulting mixture of peptides is then subjected…

Applications · Statistics 2010-11-10 Qunhua Li , Michael J. MacCoss , Matthew Stephens

The mechanism by which silver staining of proteins in polyacrylamide gels interferes with mass spectrometry of peptides produced by proteolysis has been investigated. It was demonstrated that this interference increases with time between…

Sequence coverage in MS analysis of protein digestion-derived peptides is a key issue for detailed characterization of proteins or identification at low quantities. In gel-based proteomics studies, the sequence coverage greatly depends on…

We analyse a nonlinear interferometer, also known as an SU(1,1) interferometer, in the presence of internal losses and inefficient detectors. To overcome these limitations, we consider the effect of seeding one of the interferometer input…

Thermodynamic bulk measurements of binding reactions critically rely on the validity of the law of mass action and the assumption of a dilute solution. Yet important biological systems such as allosteric ligand-receptor binding,…

Biological Physics · Physics 2017-03-31 Joan Camunas-Soler , Anna Alemany , Felix Ritort

Many pressing medical challenges - such as diagnosing disease, enhancing directed stem cell differentiation, and classifying cancers - have long been hindered by limitations in our ability to quantify proteins in single cells.…

Genomics · Quantitative Biology 2018-08-06 Harrison Specht , Nikolai Slavov

The paper presents an analysis of the possible spectra manipulation and its consequence for the specific application of XCT. The focus was on the modification of the registered spectra dominantly by the sewing/stitching method. A model…

Atomic Physics · Physics 2024-06-04 A. J. Arikkat , K. A. Janulewicz , C. M. Kim , P. Wachulak

Non-invasive light scattering methods provide data on biological macromolecules (i.e. proteins, nucleic acids, as well as assemblies and larger entities composed of them) that are complementary with those of size exclusion chromatography,…

Biomolecules · Quantitative Biology 2018-10-02 Bernard Lorber

Size and shape are critical discriminators between molecular species and states. We describe a micro-chip based high-throughput imaging approach offering rapid and precise determination of molecular properties under native solution…

RNA binding proteins play a crucial role in post-transcriptional gene regulation by controlling the transport, processing, and translation of their target RNAs. Post-transcriptional gene regulation leads to the differential expression of…

Biomolecules · Quantitative Biology 2026-03-24 Danielle Wampler , Ralf Bundschuh

The shear-jamming of dense suspensions can be strongly affected by molecular-scale interactions between particles, e.g. by chemically controlling their propensity for hydrogen bonding. However, hydrogen bonding not only enhances…

Soft Condensed Matter · Physics 2019-01-16 Nicole M. James , Chiao-Peng Hsu , Nicholas D. Spencer , Heinrich M. Jaeger , Lucio Isa

We investigate quantum spectroscopy with undetected photons for protein detection in the mid-infrared spectral region. Classical Fourier-transform infrared spectroscopy of protein samples (bovine serum albumin and N-terminal pro-brain…

In systems biology, it is becoming increasingly common to measure biochemical entities at different levels of the same biological system. Hence, data fusion problems are abundant in the life sciences. With the availability of a multitude of…

An experimental study is conducted to show the effect of the change in bandwidth of light on the spectral degree of coherence at a pair of points in the cross-section of a beam. For this purpose a polychromatic source and a monochromator…

Optics · Physics 2019-01-21 Bhaskar Kanseri , Hem Chandra Kandpal
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