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This article introduces the physics of information in the context of molecular biology and genomics. Entropy and information, the two central concepts of Shannon's theory of information and communication, are often confused with each other…

Biomolecules · Quantitative Biology 2007-05-23 Christoph Adami

This article serves as a brief introduction to the Shannon information theory. Concepts of information, Shannon entropy and channel capacity are mainly covered. All these concepts are developed in a totally combinatorial flavor. Some issues…

Information Theory · Computer Science 2021-04-26 Ricky X. F. Chen

There are numerous characterizations of Shannon entropy and Tsallis entropy as measures of information obeying certain properties. Using work by Faddeev and Furuichi, we derive a very simple characterization. Instead of focusing on the…

Information Theory · Computer Science 2017-08-22 John C. Baez , Tobias Fritz , Tom Leinster

The Shannon entropy, one of the cornerstones of information theory, is widely used in physics, particularly in statistical mechanics. Yet its characterization and connection to physics remain vague, leaving ample room for misconceptions and…

Statistical Mechanics · Physics 2021-07-28 Gabriele Carcassi , Christine A. Aidala , Julian Barbour

In the 21st century, many of the crucial scientific and technical issues facing humanity can be understood as problems associated with understanding, modelling, and ultimately controlling complex systems: systems comprised of a large number…

Information Theory · Computer Science 2025-01-20 Thomas F. Varley

Shannon entropy was defined for probability distributions and then its using was expanded to measure the uncertainty of knowledge for systems with complete information. In this article, it is proposed to extend the using of Shannon entropy…

Information Theory · Computer Science 2017-09-15 Vasile Patrascu

We deploy Shannon's information entropy to the distribution of branching fractions in a particle decay. This serves to quantify how important a given new reported decay channel is, from the point of view of the information that it adds to…

Entropy is critically examined as a fundamental concept in contemporary science and informatics. Although the typical Shannon entropy provides a proper framework for describing the canonical ensemble, it fails to represent adequately the…

Statistical Mechanics · Physics 2026-02-23 Roumen Tsekov

According to E.T. Jaynes and E.P. Wigner, entropy is an anthropomorphic concept in the sense that in a physical system correspond many thermodynamic systems. The physical system can be examined from many points of view each time examining…

Information Theory · Computer Science 2015-12-03 Panteleimon Rodis

It is shown that the standard expression for the information entropy, originally due to Shannon, is only valid for a particular set of states. For the general case of statistical mechanics, one needs to include an additional term in the…

Statistical Mechanics · Physics 2012-09-26 Phil Attard

Shannon Entropy is the preeminent tool for measuring the level of uncertainty (and conversely, information content) in a random variable. In the field of communications, entropy can be used to express the information content of given…

Information Theory · Computer Science 2024-11-06 Bill Kay , Audun Myers , Thad Boydston , Emily Ellwein , Cameron Mackenzie , Iliana Alvarez , Erik Lentz

Shannon's mathematical theory of communication defines fundamental limits on how much information can be transmitted between the different components of any man-made or biological system. This paper is an informal but rigorous introduction…

Information Theory · Computer Science 2019-06-14 James V Stone

The quantification of the complexity of networks is, today, a fundamental problem in the physics of complex systems. A possible roadmap to solve the problem is via extending key concepts of information theory to networks. In this paper we…

Disordered Systems and Neural Networks · Physics 2015-05-13 Kartik Anand , Ginestra Bianconi

Information is a precise concept that can be defined mathematically, but its relationship to what we call "knowledge" is not always made clear. Furthermore, the concepts "entropy" and "information", while deeply related, are distinct and…

Adaptation and Self-Organizing Systems · Physics 2016-03-03 Christoph Adami

In this paper, we present a new multi-scale information content calculation method based on Shannon information (and Shannon entropy). The original method described by Claude E. Shannon and based on the logarithm of the probability of…

Information Theory · Computer Science 2023-05-23 Zsolt Pocze

The information content of a source is defined in terms of the minimum number of bits needed to store the output of the source in a perfectly recoverable way. A similar definition can be given in the case of quantum sources, with qubits…

Quantum Physics · Physics 2023-04-03 Paolo Perinotti , Alessandro Tosini , Leonardo Vaglini

After Shannon, entropy becomes a fundamental quantity to describe not only uncertainity or chaos of a system but also information carried by the system. Shannon's important discovery is to give a mathematical expression of the mutual…

Quantum Physics · Physics 2007-05-23 Masanori Ohya

Shannon's entropy and other entropy-based concepts are derived from the new, more general concept of relative divergence of one "grading' function on a linearly ordered set from another such function. The definition of relative divergence…

Probability · Mathematics 2019-03-14 Alexander Dukhovny

Information plays an important role in our understanding of the physical world. We hence propose an entropic measure of information for any physical theory that admits systems, states and measurements. In the quantum and classical world,…

Quantum Physics · Physics 2010-05-04 Anthony J. Short , Stephanie Wehner

Entropic measures provide analytic tools to help us understand correlation in quantum systems. In our previous work, we calculated linear entropy and von Neumann entropy as entanglement measures for the ground state and lower lying excited…

Quantum Physics · Physics 2015-07-21 Chien-Hao Lin , Yew Kam Ho
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