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We present an introduction to RNA databases. The history and technology behind RNA databases is briefly discussed. We examine differing methods of data collection and curation, and discuss their impact on both the scope and accuracy of the…

Biomolecules · Quantitative Biology 2014-07-01 Marc P. Hoeppner , Lars E. Barquist , Paul P. Gardner

In this work we focus on fine-tuning a pre-trained BERT model and applying it to patent classification. When applied to large datasets of over two millions patents, our approach outperforms the state of the art by an approach using CNN with…

Computation and Language · Computer Science 2019-07-02 Jieh-Sheng Lee , Jieh Hsiang

In these lecture notes, a selection of frequently required statistical tools will be introduced and illustrated. They allow to post-process data that stem from, e.g., large-scale numerical simulations (aka sequence of random experiments).…

Data Analysis, Statistics and Probability · Physics 2012-07-26 O. Melchert

Analysis of a dataset including a network of LED patents and their metadata is carried out using several methods in order to answer questions about the domain. We are interested in finding the relationship between the metadata and the…

Digital Libraries · Computer Science 2014-05-23 Ben Pringle , Mukkai Krishnamoorthy , Kenneth Simons

Frequentist statistical methods, such as hypothesis testing, are standard practice in papers that provide benchmark comparisons. Unfortunately, these methods have often been misused, e.g., without testing for their statistical test…

Methodology · Statistics 2021-05-18 David Issa Mattos , Jan Bosch , Helena Holmström Olsson

This paper provides an analysis of patent activity in the field of quantum information processing. Data from the PatentScope database from the years 1993-2011 was used. In order to predict the future trends in the number of filed patents…

Physics and Society · Physics 2013-06-26 Ryszard Winiarczyk , Piotr Gawron , Jarosław Adam Miszczak , Łukasz Pawela , Zbigniew Puchała

Although researchers have devoted considerable attention to helping database users formulate queries, many users still find it challenging to specify queries that involve joining tables. To help users construct join queries for exploring…

Databases · Computer Science 2016-09-13 Minsuk Kahng , Shamkant B. Navathe , John T. Stasko , Duen Horng Chau

The basics of set theory are usually copied, directly or indirectly, by computer scientists from introductions to mathematical texts. Often mathematicians are content with special cases when the general case is of no mathematical interest.…

Discrete Mathematics · Computer Science 2007-05-23 M. H. van Emden

This tutorial overviews the state of the art in learning models over relational databases and makes the case for a first-principles approach that exploits recent developments in database research. The input to learning classification and…

Databases · Computer Science 2019-11-18 Maximilian Schleich , Dan Olteanu , Mahmoud Abo-Khamis , Hung Q. Ngo , XuanLong Nguyen

This technical report provides some lightweight introduction and some generic use case scenarios motivating the definition of a database supporting uncertainties in both queries and data. This technical report is only providing the logical…

Databases · Computer Science 2020-01-01 Giacomo Bergami

Recent advances in data science, machine learning, and artificial intelligence, such as the emergence of large language models, are leading to an increasing demand for data that can be processed by such models. While data sources are…

Machine Learning · Computer Science 2023-09-13 Paul Bilokon , Oleksandr Bilokon , Saeed Amen

DONUT is a database of papers about practical, real-world uses of Topological Data Analysis (TDA). Its original seed was planted in a group chat formed during the HIM Spring School on Applied and Computational Algebraic Topology in April…

Digital Libraries · Computer Science 2023-04-26 Barbara Giunti , Jānis Lazovskis , Bastian Rieck

In this study, we address the challenges in developing a deep learning-based automatic patent citation recommendation system. Although deep learning-based recommendation systems have exhibited outstanding performance in various domains…

Information Retrieval · Computer Science 2020-10-22 Jaewoong Choi , Sion Jang , Jaeyoung Kim , Jiho Lee , Janghyeok Yoona , Sungchul Choi

Effective query formulation is a key challenge in long-document Information Retrieval (IR). This challenge is particularly acute in domain-specific contexts like patent retrieval, where documents are lengthy, linguistically complex, and…

Information Retrieval · Computer Science 2025-07-23 Eleni Kamateri , Renukswamy Chikkamath , Michail Salampasis , Linda Andersson , Markus Endres

Pharmaceutical patents play an important role by protecting the innovation from copies but also drive researchers to innovate, create new products, and promote disruptive innovations focusing on collective health. The study of patent…

Tables are among the most powerful and practical tools for organizing and working with data. Our motivation is to equip spreadsheet programs with smart assistance capabilities. We concentrate on one particular family of tables, namely,…

Information Retrieval · Computer Science 2017-08-30 Shuo Zhang , Krisztian Balog

Patent examiners need to solve a complex information retrieval task when they assess the novelty and inventive step of claims made in a patent application. Given a claim, they search for prior art, which comprises all relevant publicly…

Information Retrieval · Computer Science 2020-12-29 Julian Risch , Nicolas Alder , Christoph Hewel , Ralf Krestel

The importance of databases of reliable and accurate data in chemistry has substantially increased in the past two decades. Their main usage is to parametrize electronic structure theory methods, and to assess their capabilities and…

Chemical Physics · Physics 2023-11-10 Pierpaolo Morgante , Roberto Peverati

Introduction to Machine learning covering Statistical Inference (Bayes, EM, ML/MaxEnt duality), algebraic and spectral methods (PCA, LDA, CCA, Clustering), and PAC learning (the Formal model, VC dimension, Double Sampling theorem).

Machine Learning · Computer Science 2009-04-24 Amnon Shashua

This paper reviews suggestions for changes to database technology coming from the work of many researchers, particularly those working with evolving big data. We discuss new approaches to remote data access and standards that better provide…

Databases · Computer Science 2023-08-15 Malcolm Crowe , Fritz Laux