Related papers: Testing Forest-Isomorphism in the Adjacency List M…
Orthology and paralogy relations are often inferred by methods based on gene similarity, which usually yield a graph depicting the relationships between gene pairs. Such relation graphs are known to frequently contain errors, as they cannot…
A set family ${\cal F}$ is called intersecting if every two members of ${\cal F}$ intersect, and it is called uniform if all members of ${\cal F}$ share a common size. A uniform family ${\cal F} \subseteq \binom{[n]}{k}$ of $k$-subsets of…
We study graph estimation and density estimation in high dimensions, using a family of density estimators based on forest structured undirected graphical models. For density estimation, we do not assume the true distribution corresponds to…
A common subgraph of two graphs $G_1$ and $G_2$ is a graph that is isomorphic to subgraphs of $G_1$ and $G_2$. In the largest common subgraph problem the task is to determine a common subgraph for two given graphs $G_1$ and $G_2$ that is of…
The AHU-algorithm solves the computationally difficult graph isomorphism problem for rooted trees, and does so with a linear time complexity. Although the AHU-algorithm has remained state of the art for almost 50 years, it has been…
In many statistical applications, the dimension is too large to handle for standard high-dimensional machine learning procedures. This is particularly true for graphical models, where the interpretation of a large graph is difficult and…
In this paper we study several problems concerning the number of homomorphisms of trees. We give an algorithm for the number of homomorphisms from a tree to any graph by the Transfer-matrix method. By using this algorithm and some…
Given a graph, we can form a spanning forest by first sorting the edges in some order, and then only keep edges incident to a vertex which is not incident to any previous edge. The resulting forest is dependent on the ordering of the edges,…
Our starting point is the observation that if graphs in a class C have low descriptive complexity in first order logic, then the isomorphism problem for C is solvable by a fast parallel algorithm (essentially, by a simple combinatorial…
This paper outlines a method to determine whether two label-regular directed trees, are isomorphic and when they are almost isomorphic. The approach involves reinterpreting label-regular directed trees as universal covers of rooted graphs.…
Let $G = (V,E)$ denote a simple graph with the vertex set $V$ and the edge set $E$. The profile of a vertex set $V'\subseteq V$ denotes the multiset of pairwise distances between the vertices of $V'$. Two disjoint subsets of $V$ are…
We consider the problem of approximating the arboricity of a graph $G= (V,E)$, which we denote by $\mathsf{arb}(G)$, in sublinear time, where the arboricity of a graph is the minimal number of forests required to cover its edges. An…
The probability that two randomly selected phylogenetic trees of the same size are isomorphic is found to be asymptotic to a decreasing exponential modulated by a polynomial factor. The number of symmetrical nodes in a random phylogenetic…
We investigate distribution testing with access to non-adaptive conditional samples. In the conditional sampling model, the algorithm is given the following access to a distribution: it submits a query set $S$ to an oracle, which returns a…
From the identification of a drawback in the Isolation Forest (IF) algorithm that limits its use in the scope of anomaly detection, we propose two extensions that allow to firstly overcome the previously mention limitation and secondly to…
Multi-view learning is a learning task in which data is described by several concurrent representations. Its main challenge is most often to exploit the complementarities between these representations to help solve a…
Given two graphs $H$ and $G$, the Subgraph Isomorphism problem asks if $H$ is isomorphic to a subgraph of $G$. While NP-hard in general, algorithms exist for various parameterized versions of the problem: for example, the problem can be…
We present the implementation of an algorithm for graph isomorphism testing, based on ideas about number of walks (of sufficiently large length) between vertices. The algorithm is expanded for strongly regular graphs (SRG-s) by testing the…
Following the line of classification-based two-sample testing, tests based on the Random Forest classifier are proposed. The developed tests are easy to use, require almost no tuning, and are applicable for any distribution on…
We study the query complexity of testing for properties defined by read once formulas, as instances of {\em massively parametrized properties}, and prove several testability and non-testability results. First we prove the testability of any…