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Phosphorelays are a class of signaling mechanisms used by cells to respond to changes in their environment. Phosphorelays (of which two-component systems constitute a special case) are particularly abundant in prokaryotes and have been…

Molecular Networks · Quantitative Biology 2011-09-26 Michael Knudsen , Elisenda Feliu , Carsten Wiuf

An important problem in the theory of finite dynamical systems is to link the structure of a system with its dynamics. This paper contains such a link for a family of nonlinear systems over the field with two elements. For systems that can…

Combinatorics · Mathematics 2024-11-19 Omar Colon-Reyes , Reinhard Laubenbacher , Bodo Pareigis

Two generically different but universal dynamical quantum many-body behaviors are discovered by probing the stability of trapped fragmented bosonic systems with strong repulsive finite/long range inter-particle interactions. We use…

Quantum Gases · Physics 2014-10-21 Oksana I. Streltsova , Ofir E. Alon , Lorenz S. Cederbaum , Alexej I. Streltsov

We present a two channel driven lattice gas model with oppositely directed species moving on two parallel lanes with lane switching processes. We study correlated lane switching mechanism for particles so that switching may occur with…

Statistical Mechanics · Physics 2015-05-28 Sudipto Muhuri , Ignacio Pagonabarraga

Driven-dissipative light-matter systems can exhibit collective nonequilibrium phenomena due to loss and gain processes on the one hand and effective photon-photon interactions on the other hand. As generic example we study a bosonic lattice…

Quantum Physics · Physics 2024-09-17 Arkadiusz Kosior , Karol Gietka , Farokh Mivehvar , Helmut Ritsch

We propose a methodology to analyze synchronization in an ensemble of diffusively coupled multistable systems. First, we study how two bidirectionally coupled multistable oscillators synchronize and demonstrate the high complexity of the…

Chaotic Dynamics · Physics 2015-06-23 R. Sevilla-Escoboza , J. M. Buldú , A. N. Pisarchik , S. Boccaletti , R. Gutiérrez

Observations of single epidermal cells on flat adhesive substrates have revealed two distinct morphological and functional states, namely a non-migrating symmetric unpolarized state and a migrating asymmetric polarized state. These states…

Biological Physics · Physics 2010-04-14 Wolfgang Alt , Martin Bock , Christoph Möhl

Signaling molecules play an important role for many cellular functions. We investigate here a general system of two membrane reaction-diffusion equations coupled to a diffusion equation inside the cell by a Robin-type boundary condition and…

Analysis of PDEs · Mathematics 2015-06-16 Andreas Rätz , Matthias Röger

In neuroscience, optics and condensed matter there is ample physical evidence for multistable dynamical systems, that is, systems with a large number of attractors. The known mathematical mechanisms that lead to multiple attractors are…

chao-dyn · Physics 2007-05-23 R. Vilela Mendes

We derive a theory for Bose condensation in nonequilibrium steady states of bosonic quantum gases that are coupled both to a thermal heat bath and to a pumped reservoir (or gain medium), while suffering from loss. Such a scenario describes…

Statistical Mechanics · Physics 2018-07-04 Daniel Vorberg , Roland Ketzmerick , André Eckardt

We present a theoretical and computational model for the behavior of a porous solid undergoing two interdependent processes, the finite deformation of a solid and species migration through the solid, which are distinct in bulk and on…

Soft Condensed Matter · Physics 2023-05-16 Jaemin Kim , Ida Ang , Francesco Ballarin , Chung-Yuen Hui , Nikolaos Bouklas

Mass-conserving reaction-diffusion systems with bistable nonlinearity are useful models for studying cell polarity formation, which is a key process in cell division and differentiation. We rigorously show the existence and stability of…

Analysis of PDEs · Mathematics 2025-05-23 Masataka Kuwamura , Takashi Teramoto , Hideo Ikeda

Biochemical covalent modification networks exhibit a remarkable suite of steady state and dynamical properties such as multistationarity, oscillations, ultrasensitivity and absolute concentration robustness. This paper focuses on conditions…

Molecular Networks · Quantitative Biology 2024-02-29 Badal Joshi , Tung D. Nguyen

Delay is an inherent feature of genetic regulatory networks. It represents the time required for the assembly of functional regulator proteins. The protein production process is complex, as it includes transcription, translocation,…

Subcellular Processes · Quantitative Biology 2025-12-29 Sean Campbell , Courtney C. White , Amanda M. Alexander , William Ott

The conditions under which biological cells switch from a static to a motile state are fundamental to the understanding of many healthy and pathological processes. In this paper, we show that even in the presence of a fully symmetric…

Biological Physics · Physics 2024-01-12 Jocelyn Étienne , Pierre Recho

We study a system of self-propelled disks that perform run-and-tumble motion, where particles can adopt more than one internal state. One of those internal states can be transmitted to another particle if the particle carrying this state…

Biological Physics · Physics 2019-12-30 Fernando Peruani , Gustavo Sibona

Many biochemical processes can successfully be described by dynamical systems allowing some form of switching when, depending on their initial conditions, solutions of the dynamical system end up in different regions of state space…

Molecular Networks · Quantitative Biology 2011-09-27 Carsten Conradi , Dietrich Flockerzi

Pluripotent embryonic stem cells are of paramount importance for biomedical research thanks to their innate ability for self-renewal and differentiation into all major cell lines. The fateful decision to exit or remain in the pluripotent…

Molecular Networks · Quantitative Biology 2018-07-04 Yen Ting Lin , Peter G. Hufton , Esther J. Lee , Davit A. Potoyan

The motility of a fish keratocyte on a flat substrate exhibits two distinct regimes: the non-migrating and the migrating one. In both configurations the shape is fixed in time and, when the cell is moving, the velocity is constant in…

Cell Behavior · Quantitative Biology 2016-06-29 Davide Ambrosi , Anna Zanzottera

Diffusive transport of small molecules within the internal structures of biological and synthetic material systems is complex because the crowded environment presents chemical and physical barriers to mobility. We explored this mobility…

Soft Condensed Matter · Physics 2020-09-29 Rajarshi Guha , Subhadip Ghosh , Darrell Velegol , Peter J. Butler , Ayusman Sen , Jennifer L. Ross
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