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Evolutionary adaptation is the process that increases the fit of a population to the fitness landscape it inhabits. As a consequence, evolutionary dynamics is shaped, constrained, and channeled, by that fitness landscape. Much work has been…

Populations and Evolution · Quantitative Biology 2010-12-17 Bjørn Østman , Arend Hintze , Christoph Adami

We investigate the equilibria of a random model network exhibiting extensive chaos. In this regime, a large number of equilibria is present. They are all saddles with low-dimensional unstable manifolds. Surprisingly, despite network's…

Disordered Systems and Neural Networks · Physics 2025-10-23 Xiaoyu Yang , Giancarlo La Camera , Gianluigi Mongillo

We show that a neural network originally designed for language processing can learn the dynamical rules of a stochastic system by observation of a single dynamical trajectory of the system, and can accurately predict its emergent behavior…

Statistical Mechanics · Physics 2022-02-18 Corneel Casert , Isaac Tamblyn , Stephen Whitelam

Statistical neurodynamics studies macroscopic behaviors of randomly connected neural networks. We consider a deep layered feedforward network where input signals are processed layer by layer. The manifold of input signals is embedded in a…

Disordered Systems and Neural Networks · Physics 2018-08-23 Shun-ichi Amari , Ryo Karakida , Masafumi Oizumi

We offer a general theoretical framework for brain and behavior that is evolutionarily and computationally plausible. The brain in our abstract model is a network of nodes and edges. Although it has some similarities to standard neural…

Artificial Intelligence · Computer Science 2022-04-12 Joseph Y. Halpern , Arnon Lotem

We investigate the dynamics of continuous attractor neural networks (CANNs). Due to the translational invariance of their neuronal interactions, CANNs can hold a continuous family of stationary states. We systematically explore how their…

Disordered Systems and Neural Networks · Physics 2015-02-03 C. C. Alan Fung , K. Y. Michael Wong , Si Wu

Complex environments provide structured yet variable sensory inputs. To best exploit information from these environments, organisms must evolve the ability to anticipate consequences of unknown stimuli, and act on these predictions. We…

Neural and Evolutionary Computing · Computer Science 2019-07-16 Lana Sinapayen , Atsushi Masumori , Ikegami Takashi

The knowledge of the Free Energy Landscape topology is the essential key to understand many biochemical processes. The determination of the conformers of a protein and their basins of attraction takes a central role for studying molecular…

Biomolecules · Quantitative Biology 2009-06-26 Diego Prada-Gracia , Jesus Gomez-Gardenes , Pablo Echenique , Fernando Falo

Flexible modulation of temporal dynamics in neural sequences underlies many cognitive processes. For instance, we can adaptively change the speed of motor sequences and speech. While such flexibility is influenced by various factors such as…

Neurons and Cognition · Quantitative Biology 2025-04-15 Tomoki Kurikawa , Kunihiko Kaneko

We describe the dynamics of a simple adaptive network. The network architecture evolves to a number of disconnected components on which the dynamics is characterized by the possibility of differently synchronized nodes within the same…

Adaptation and Self-Organizing Systems · Physics 2015-05-28 V. Botella-Soler , P. Glendinning

We show that, during adiabatic evolution, any changes in entanglement can be attributed to a succession of avoided energy level crossings at which eigenvalues swap their eigenvectors. These swaps mediate the generation and redistribution of…

Quantum Physics · Physics 2025-08-14 Einar Gabbassov , Achim Kempf

We study the dynamical states that emerge in a small-world network of recurrently coupled excitable neurons through both numerical and analytical methods. These dynamics depend in large part on the fraction of long-range connections or…

Neurons and Cognition · Quantitative Biology 2009-11-13 Hermann Riecke , Alex Roxin , Santiago Madruga , Sara A. Solla

Despite the striking successes of deep neural networks trained with gradient-based optimization, these methods differ fundamentally from their biological counterparts. This gap raises key questions about how nature achieves robust,…

Machine Learning · Computer Science 2025-10-15 Mattia Scardecchia

Modular organization characterizes many complex networks occurring in nature, including the brain. In this paper we show that modular structure may be responsible for increasing the robustness of certain dynamical states of such systems. In…

Disordered Systems and Neural Networks · Physics 2015-05-27 Neeraj Pradhan , Subinay Dasgupta , Sitabhra Sinha

We study transient sequential dynamics of evolving dynamical networks, i.e., those having active nodes and links and activity-dependent topology. We show that such networks can generate sequences of metastable cluster states where each…

Chaotic Dynamics · Physics 2014-12-01 Oleg V. Maslennikov , Vladimir I. Nekorkin

In order to efficiently explore the chemical space of all possible small molecules, a common approach is to compress the dimension of the system to facilitate downstream machine learning tasks. Towards this end, we present a data driven…

Biomolecules · Quantitative Biology 2024-01-23 Paula Mercurio , Di Liu

The ability of humans and animals to quickly adapt to novel tasks is difficult to reconcile with the standard paradigm of learning by slow synaptic weight modification. Here we show that fixed-weight neural networks can learn to generate…

Neurons and Cognition · Quantitative Biology 2020-08-26 Christian Klos , Yaroslav Felipe Kalle Kossio , Sven Goedeke , Aditya Gilra , Raoul-Martin Memmesheimer

Spatio-temporal network dynamics is an emergent property of many complex systems which remains poorly understood. We suggest a new approach to its study based on the analysis of dynamical motifs -- small subnetworks with periodic and…

Disordered Systems and Neural Networks · Physics 2007-05-23 Valentin P. Zhigulin

Biological neural networks continuously adapt and modify themselves in response to experiences throughout their lifetime - a capability largely absent in artificial neural networks. Hebbian plasticity offers a promising path toward rapid…

Neural and Evolutionary Computing · Computer Science 2026-03-25 Alexander Dittrich , Fuda van Diggelen , Dario Floreano

Animals often demonstrate a remarkable ability to adapt to their environments during their lifetime. They do so partly due to the evolution of morphological and neural structures. These structures capture features of environments shared…

Machine Learning · Computer Science 2024-01-30 Corentin Léger , Gautier Hamon , Eleni Nisioti , Xavier Hinaut , Clément Moulin-Frier
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