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Non-adiabatic molecular dynamics simulations are used to analyze the role of different solvent degrees of freedom in the non-radiative relaxation of the first excited state of the hydrated electron. The relaxation occurs through a…

chem-ph · Physics 2008-02-03 Oleg V. Prezhdo , Peter J. Rossky

The water hydration shell has decisive impact on the structural and functional properties of RNA. Changes of RNA structure upon melting and in biochemical processes are accompanied by a change of hydration patterns, a process which is…

Chemical Physics · Physics 2020-03-02 Achintya Kundu , Jakob Schauss , Benjamin P. Fingerhut , Thomas Elsaesser

Electric interactions have a strong impact on the structure and dynamics of biomolecules in their native water environment. Given the variety of water arrangements in hydration shells and the femto- to subnanosecond time range of structural…

Chemical Physics · Physics 2021-08-27 Thomas Elsaesser , Jakob Schauss , Achintya Kundu , Benjamin P. Fingerhut

A computational approach to describe the energy relaxation of a high-frequency vibrational mode in a fluctuating heterogeneous environment is outlined. Extending previous work [H. Fujisaki, Y. Zhang, and J.E. Straub, J. Chem. Phys. {\bf…

Chemical Physics · Physics 2009-11-13 Hiroshi Fujisaki , Gerhard Stock

Numerical simulations of hydrated proteins show that protein hydration shells are polarized into a ferroelectric cluster with a large magnitude of its average dipole moment. The emergence of this new mesophase dramatically alters the…

Biological Physics · Physics 2010-06-02 David N. LeBard , Dmitry V. Matyushov

Photosynthesis relies on efficient energy relaxation within the excited-state manifold of pigment-protein complexes. Since the protein scaffold is rather flexible, the resulting energetic and structural disorder gives rise to a complex…

Understanding the ultrafast vibrational relaxation following photoexcitation of molecules in a condensed phase is essential to predict the outcome and improve the efficiency of photoinduced molecular processes. Here, the vibrational…

Chemical Physics · Physics 2025-02-18 Benedikt O Birgisson , Asmus Ougaard Dohn , Hannes Jónsson , Gianluca Levi

When analyzing the broadband absorption spectrum of liquid water (10^10 - 10^13 Hz), we find its relaxation-resonance features to be an indication of Frenkel's translation-oscillation motion of particles, which is fundamentally inherent to…

Soft Condensed Matter · Physics 2026-03-26 A. A. Volkov , V. G. Artemov , A. A. Volkov , N. N. Sysoev

We study the exact fluctuating hydrodynamics of the scaled Light-Heavy model (sLH), in which two species of particles (light and heavy) interact with a fluctuating surface. This model is similar in definition to the unscaled Light-Heavy…

Statistical Mechanics · Physics 2025-03-21 Shilpa Prakash , Mustansir Barma , Kabir Ramola

The molecular mechanism of the solvent motion that is required to instigate the protein structural relaxation above a critical hydration level or transition temperature has yet to be determined. In this work we use quasi-elastic neutron…

Biomolecules · Quantitative Biology 2016-09-08 Daniela Russo , Greg Hura , Teresa Head-Gordon

The photosystem II reaction centre is the photosynthetic complex responsible for oxygen production on Earth. Its water splitting function is particularly favoured by the formation of a stable charge separated state via a pathway that starts…

Biological Physics · Physics 2017-07-18 Richard Stones , Hoda Hossein-Nejad , Rienk van Grondelle , Alexandra Olaya-Castro

The solvation structures and ion dynamics of CaCl$_2$ aqueous electrolytes have been investigated using ab initio molecular dynamics simulations and molecular dynamics simulations with deep learning potentials. We found multiple solvation…

Chemical Physics · Physics 2023-07-20 Zhou Yu , Lei Cheng

The observation of chemical reactions on the time scale of the motion of electrons and nuclei has been made possible by lasers with ever shortened pulse lengths. Superfluid helium represents a special solvent that permits the synthesis of…

The phase coherence relaxation times as long as $T_2\sim830-1030\pm20$ ns were measured for the [2Fe-2S] cluster in the intrinsic protein environment. This relaxation corresponds to a relatively long lasting coherence of the low-spin…

Biomolecules · Quantitative Biology 2015-04-02 Amgalanbaatar Baldansuren

We use transient absorption spectroscopy to monitor the ionization and dissociation products following two-photon excitation of pure liquid water. The two decay mechanisms occur with similar yield for an excitation energy of 9.3 eV, whereas…

Chemical Physics · Physics 2009-11-13 Christopher G. Elles , Ilya A. Shkrob , Robert A. Crowell , Stephen E. Bradforth

Ion hydration and interfacial water play crucial roles in numerous phenomena ranging from biological to industrial systems. Although biologically relevant (and mostly smaller) ions have been studied extensively in this context, very little…

Soft Condensed Matter · Physics 2019-01-01 William Rock , Baofu Qiao , Tiecheng Zhou , Aurora E. Clark , Ahmet Uysal

Photo-switching the physical properties of molecular systems opens large possibilities for driving materials far from equilibrium toward new states. Moreover, ultra-short pulses of light make it possible to induce and to record…

Materials Science · Physics 2019-10-02 Amine Hamouda , Fredéric Dutin , Jerome Degert , Marc Tondusson , Ahmad Naïm , Patrick Rosa , Eric Freysz

The high frequency collective dynamics of liquid hydrogen fluoride is studied by inelastic x-ray scattering on the coexistence curve at T = 239 K. The comparison with existing molecular dynamics simulations shows the existence of two active…

Soft Condensed Matter · Physics 2023-08-29 R. Angelini , P. Giura , G. Monaco , G. Ruocco , F. Sette , R. Verbeni

Quantum calculations are performed for an anion water cluster representing the first hydration shell of the solvated electron in solution. The absorption spectra from the ground state, the instant excited states and the relaxed excited…

Soft Condensed Matter · Physics 2009-11-11 P. O. J. Scherer , Sighart F. Fischer

When a hydrophilic solute in water is suddenly turned into a hydrophobic species, for instance, by photoionization, a layer of hydrated water molecules forms around the solute on a time scale of a few picoseconds. We study the dynamic…

Soft Condensed Matter · Physics 2022-02-11 Henning Kirchberg , Peter Nalbach , Christian Bressler , Michael Thorwart
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