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Efficient replication and assembly of virus particles are integral to the establishment of infection. In addition to the primary role of the capsid protein (CP) in encapsidating the RNA progeny, experimental evidence on positive sense…

Kinesin superfamily protein UNC-104, a member of the kinesin-3 family, transports synaptic vesicle precursors (SVPs). In this study, the number of active UNC-104 molecules hauling a single SVP in axons in the worm Caenorhabditis elegans was…

Biological Physics · Physics 2018-03-01 Kumiko Hayashi , Shin Hasegawa , Takashi Sagawa , Sohei Tasaki , Shinsuke Niwa

Significantly higher transmissibility of SARS CoV-2 (2019) compared to SARS CoV (2003) can be attributed to mutations of structural proteins (Spike S, Nucleocapsid N, Membrane M, and Envelope E) and the role played by non-structural…

Other Quantitative Biology · Quantitative Biology 2022-12-02 Raju Hazari , Parimal Pal Chaudhuri

Identifying the main environmental drivers of SARS-CoV-2 transmissibility in the population is crucial for understanding current and potential future outbursts of COVID-19 and other infectious diseases. To address this problem, we…

Populations and Evolution · Quantitative Biology 2021-09-01 Marko Djordjevic , Igor Salom , Sofija Markovic , Andjela Rodic , Ognjen Milicevic , Magdalena Djordjevic

Neonatal sepsis (NS) is responsible for over a 1 million yearly deaths worldwide. In the developing world NS is often treated without an identified microbial pathogen. Amplicon sequencing of the bacterial 16S rRNA gene can be used to…

Non structural protein 3 (NS3) helicase from hepatitis C virus is an enzyme that unwinds and translocates along nucleic acids with an ATP-dependent mechanism and has a key role in the replication of the viral RNA. An inchworm-like mechanism…

Biomolecules · Quantitative Biology 2016-01-06 Andrea Pérez-Villa , Maria Darvas , Giovanni Bussi

The reason of significantly higher transmissibility of SARS Covid (2019 CoV-2) compared to SARS Covid (2003 CoV) and MERS Covid (2012 MERS) can be attributed to mutations reported in structural proteins, and the role played by…

Biomolecules · Quantitative Biology 2022-02-25 Raju Hazari , P Pal Chaudhuri

Accurate identification of respiratory viruses (RVs) is critical for outbreak control and public health. This study presents a diagnostic system that combines Attenuated Total Reflectance Fourier Transform Infrared Spectroscopy (ATR-FTIR)…

Machine Learning · Computer Science 2025-04-15 Wenwen Zhang , Zhouzhuo Tang , Yingmei Feng , Xia Yu , Qi Jie Wang , Zhiping Lin

Viruses can amplify their genomes following different replication modes (RMs) ranging from the stamping machine replication (SMR) model to the geometric replication (GR) model. Different RMs are expected to produce different evolutionary…

Populations and Evolution · Quantitative Biology 2014-11-27 Josep Sardanyés

Background: Norovirus is a common cause of outbreaks of acute gastroenteritis in health- and child-care settings, with serial outbreaks also frequently observed aboard cruise ships. The relative contributions of environmental and direct…

Quantitative Methods · Quantitative Biology 2017-05-31 Sherry Towers , Jun Chen , Carlos Cruz , Steven Madler , Juan Melendez , Jennifer Rodriguez , Armando Salinas , Fan Yu , Yun Kang

HIV-1 replication can be suppressed with antiretroviral therapy (ART), but individuals who stop taking ART soon become viremic again. Some people experience extended times of detectable viremia despite optimal adherence to ART. In the issue…

Biomolecules · Quantitative Biology 2025-06-02 Xiangshuai Liu

Coronaviruses are enveloped, non-segmented positive-sense RNA viruses that have the largest genome among RNA viruses. The genome contains a large replicase ORF encodes nonstructural proteins (NSPs), structural and accessory genes. NSP15 is…

Biomolecules · Quantitative Biology 2020-07-29 Ramachandran Vijayan , Samudrala Gourinath

Autism spectrum disorder (ASD) is a heterogeneous neurodevelopmental disorder (NDD) that is caused by genetic, epigenetic, and environmental factors. Recent advances in genomic analysis have uncovered numerous candidate genes with common…

SARS-CoV-2 is what has caused the COVID-19 pandemic. Early viral infection is mediated by the SARS-CoV-2 homo-trimeric Spike (S) protein with its receptor binding domains (RBDs) in the receptor-accessible state. We performed molecular…

Biomolecules · Quantitative Biology 2021-01-07 Yao Li , Tong Wang , Juanrong Zhang , Bin Shao , Haipeng Gong , Yusong Wang , Siyuan Liu , Tie-Yan Liu

Respiratory syncytial virus (RSV) is one of the most dangerous respiratory diseases for infants and young children. Due to the nonpharmaceutical intervention (NPI) imposed in the COVID-19 outbreak, the seasonal transmission pattern of RSV…

Machine Learning · Computer Science 2023-05-04 Xinyan Li , Cheng Qian , Lucas Glass

Hepatitis B virus (HBV) is considered as etiological agent of the lethal liver disease hepatitis B. Globally, hepatitis B is recognized as one of the prevailing infectious diseases with a significant impact on human health. In spite of…

Quantitative Methods · Quantitative Biology 2024-11-19 Rupchand Sutradhar , Gopinath Sadhu , D C Dalal

Coronavirus disease 2019 (COVID-19) is a continuously devastating public health and the world economy. One of the major challenges in controlling the COVID-19 outbreak is its asymptomatic infection and transmission, which are elusive and…

Populations and Evolution · Quantitative Biology 2020-07-06 Rui Wang , Yuta Hozumi , Changchuan Yin , Guo-Wei Wei

The mutation-selection mechanism of Darwinian evolution gives rise not only to adaptation to environmental conditions but also to the enhancement of robustness against mutations. When two or more phenotypes have the same fitness value, the…

Populations and Evolution · Quantitative Biology 2024-11-20 Macoto Kikuchi

Structural variation occurs in the genomes of individuals because of the different positions occupied by repetitive genome elements like endogenous retroviruses, or ERVs. The presence or absence of ERVs can be determined by identifying the…

Applications · Statistics 2017-01-05 David R. Hunter , Le Bao , Mary Poss

The COVID-19 pandemic caused by the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has spurred unprecedented and concerted worldwide research to curtail and eradicate this pathogen. SARS-CoV-2 has four structural proteins:…

Biological Physics · Physics 2022-09-26 Siyu Li , Roya Zandi
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