Related papers: Monadic Datalog Containment on Trees
In their AMW14-paper, Frochaux, Grohe, and Schweikardt showed that the query containment problem for monadic datalog on finite unranked labeled trees is Exptime-complete when (a) considering unordered trees using the child-axis, and when…
In the article 'Recursive queries on trees and data trees' (ICDT'13), Abiteboul et al., asked whether the containment problem for monadic datalog over unordered unranked labeled trees using the child relation and the descendant relation is…
We study the complexity and expressive power of conjunctive queries over unranked labeled trees represented using a variety of structure relations such as ``child'', ``descendant'', and ``following'' as well as unary relations for node…
The containment problem of Datalog queries is well known to be undecidable. There are, however, several Datalog fragments for which containment is known to be decidable, most notably monadic Datalog and several "regular" query languages on…
We give an algorithm to enumerate the results on trees of monadic second-order (MSO) queries represented by nondeterministic tree automata. After linear time preprocessing (in the input tree), we can enumerate answers with linear delay (in…
We study the problem of eliminating recursion from monadic datalog programs on trees with an infinite set of labels. We show that the boundedness problem, i.e., determining whether a datalog program is equivalent to some nonrecursive one is…
We study the problem of enumerating the answers to a query formulated in monadic second order logic (MSO) over an unranked forest F that is compressed by a straight-line program (SLP) D. Our main result states that this can be done after…
Phylogenetic trees and networks are leaf-labelled graphs that are used to describe evolutionary histories of species. The Tree Containment problem asks whether a given phylogenetic tree is embedded in a given phylogenetic network. Given a…
We consider the satisfiability problem for the two-variable fragment of first-order logic over finite unranked trees. We work with signatures consisting of some unary predicates and the binary navigational predicates child, right sibling,…
Tree containment problem is a fundamental problem in phylogenetic study, as it is used to verify a network model. It asks whether a given network contain a subtree that resembles a binary tree. The problem is NP-complete in general, even in…
We study query containment in three closely related formalisms: monadic disjunctive Datalog (MDDLog), MMSNP (a logical generalization of constraint satisfaction problems), and ontology-mediated queries (OMQs) based on expressive description…
We study the program complexity of datalog on both finite and infinite linear orders. Our main result states that on all linear orders with at least two elements, the nonemptiness problem for datalog is EXPTIME-complete. While containment…
In phylogenetics, a central problem is to infer the evolutionary relationships between a set of species $X$; these relationships are often depicted via a phylogenetic tree -- a tree having its leaves univocally labeled by elements of $X$…
In this work, we answer an open problem in the study of phylogenetic networks. Phylogenetic trees are rooted binary trees in which all edges are directed away from the root, whereas phylogenetic networks are rooted acyclic digraphs. For the…
We introduce a model of register automata over infinite trees with extrema constraints. Such an automaton can store elements of a linearly ordered domain in its registers, and can compare those values to the suprema and infima of register…
We introduce a logical foundation to reason on tree structures with constraints on the number of node occurrences. Related formalisms are limited to express occurrence constraints on particular tree regions, as for instance the children of…
Verification of properties of first order logic with two variables FO2 has been investigated in a number of contexts. Over arbitrary structures it is known to be decidable with NEXPTIME complexity, with finitely satisfiable formulas having…
We introduce a variant of modal logic, dubbed EXISTENTIAL COUNTING MODAL LOGIC (ECML), which captures a vast majority of problems known to be tractable in single exponential time when parameterized by treewidth. It appears that all these…
Given two messages - as linear sequences of letters, it is immediate to determine whether one can be transformed into the other by simple substitution cipher of the letters. On the other hand, if the letters are carried as labels on nodes…
We present an algorithm for computing a maximum agreement subtree of two unrooted evolutionary trees. It takes O(n^{1.5} log n) time for trees with unbounded degrees, matching the best known time complexity for the rooted case. Our…