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The purpose of this work in to demonstrate the initial results of a research project having as its goal to develop dynamic models of the brain network involved in aggressive behavior. In this way, the complex neural process correlated to…

Neurons and Cognition · Quantitative Biology 2015-03-19 Carlos B. Moreno , José-Luis. Díaz , J. H. Martínez

Process discovery techniques return process models that are either formal (precisely describing the possible behaviors) or informal (merely a "picture" not allowing for any form of formal reasoning). Formal models are able to classify…

Software Engineering · Computer Science 2025-07-22 Wil M. P. van der Aalst , Riccardo De Masellis , Chiara Di Francescomarino , Chiara Ghidini

We apply Coloured Petri Nets (CPNs) and the CPN Tools to develop a formal model of an embedded system consisting of a power converter and an associated controller. Matlab/Simulink is the de-facto tool for embedded control and system design,…

Logic in Computer Science · Computer Science 2022-12-14 Vegard Steinsland , Lars Michael Kristensen , Shujun Zhang

This paper exploits extended Bayesian networks for uncertainty reasoning on Petri nets, where firing of transitions is probabilistic. In particular, Bayesian networks are used as symbolic representations of probability distributions,…

Artificial Intelligence · Computer Science 2020-10-01 Rebecca Bernemann , Benjamin Cabrera , Reiko Heckel , Barbara König

This paper deals with the parallel raytracing part of virtual-reality system PROLAND, developed at the home institution of authors. It describes an actual implementation of the raytracing part and introduces a Coloured Petri Nets model of…

Distributed, Parallel, and Cluster Computing · Computer Science 2010-03-13 Stefan Korecko , Branislav Sobota

Pre-trained models of code built on the transformer architecture have performed well on software engineering (SE) tasks such as predictive code generation, code summarization, among others. However, whether the vector representations from…

Software Engineering · Computer Science 2021-08-26 Anjan Karmakar , Romain Robbes

The observed architecture of ecological and socio-economic networks differs significantly from that of random networks. From a network science standpoint, non-random structural patterns observed in real networks call for an explanation of…

Physics and Society · Physics 2019-05-30 Manuel Sebastian Mariani , Zhuo-Ming Ren , Jordi Bascompte , Claudio Juan Tessone

Petri Nets (PN) are a central, theoretically sound model for concurrent or distributed systems but, at least in their classical definition, not expressive enough to represent dynamic reconfiguration capabilities. On the other side,…

Logic in Computer Science · Computer Science 2021-11-17 Lorenzo Capra

Single-filament tracing has been a valuable tool to directly determine geometrical and mechanical properties of entangled polymer networks. However, systematically verifying how the stiffness of the tracer filament or its molecular…

Soft Condensed Matter · Physics 2022-01-05 Tina Händler , Cary Tutmarc , Martin Glaser , Jessica S. Freitag , David M. Smith , Jörg Schnauß

We propose a new method for computing the language intersection of two Time Petri nets (TPN); that is the sequence of labels in timed traces common to the execution of two TPN. Our approach is based on a new product construction between…

Logic in Computer Science · Computer Science 2019-08-07 Yannick Pencolé , Éric Lubat , Silvano Dal Zilio , Didier Le Botlan , Audine Subias

Most available tools propose simulation frameworks to study models of biological systems, but simulation only explores a few of the most probable behaviours of the system. On the contrary, techniques such as model checking, coming from…

Logic in Computer Science · Computer Science 2011-08-18 Nicolas Sedlmajer , Didier Buchs , Steve Hostettler , Alban Linard , Edmundo Lopez , Alexis Marechal

Computer simulations can aid in understanding how collective materials properties emerge from interactions between simple constituents. Here, we introduce a coarse-grained model that enables simulation of networks of actin filaments, myosin…

Biological Physics · Physics 2018-12-07 Simon L. Freedman , Shiladitya Banerjee , Glen M. Hocky , Aaron R. Dinner

While large-scale distributed data processing platforms have become an attractive target for query processing, these systems are problematic for applications that deal with nested collections. Programmers are forced either to perform…

Databases · Computer Science 2020-11-13 Jaclyn Smith , Michael Benedikt , Milos Nikolic , Amir Shaikhha

Boolean networks (BNs) are widely used to model the qualitative dynamics of biological systems. Besides the logical rules determining the evolution of each component with respect to the state of its regulators, the scheduling of component…

Logic in Computer Science · Computer Science 2019-06-03 Thomas Chatain , Stefan Haar , Juraj Kolčák , Loïc Paulevé , Aalok Thakkar

Named Entity Recognition (NER) is a well researched NLP task and is widely used in real world NLP scenarios. NER research typically focuses on the creation of new ways of training NER, with relatively less emphasis on resources and…

Computation and Language · Computer Science 2022-05-05 Sowmya Vajjala , Ramya Balasubramaniam

We revisit and extend model stitching (Lenc & Vedaldi 2015) as a methodology to study the internal representations of neural networks. Given two trained and frozen models $A$ and $B$, we consider a "stitched model'' formed by connecting the…

Machine Learning · Computer Science 2021-06-16 Yamini Bansal , Preetum Nakkiran , Boaz Barak

This paper contains introductory material on Petri nets and Groebner basis theory and makes some observations on the relation between the two areas. The aim of the paper is to show how Groebner basis procedures can be applied to the problem…

Combinatorics · Mathematics 2007-05-23 Angie Chandler , Anne Heyworth

There has been an increasing interest in learning dynamics simulators for model-based control. Compared with off-the-shelf physics engines, a learnable simulator can quickly adapt to unseen objects, scenes, and tasks. However, existing…

Artificial Intelligence · Computer Science 2019-04-19 Yunzhu Li , Jiajun Wu , Jun-Yan Zhu , Joshua B. Tenenbaum , Antonio Torralba , Russ Tedrake

Complex networks are frequently employed to model physical or virtual complex systems. When certain entities exist across multiple systems simultaneously, unveiling their corresponding relationships across the networks becomes crucial. This…

Physics and Society · Physics 2025-04-16 Rui Tang , Ziyun Yong , Shuyu Jiang , Xingshu Chen , Yaofang Liu , Yi-Cheng Zhang , Gui-Quan Sun , Wei Wang

This paper constitutes a short introduction to parametric verification of concurrent systems. It originates from two 1-day tutorial sessions held at the Petri nets conferences in Toru\'n (2016) and Zaragoza (2017). The paper presents not…

Logic in Computer Science · Computer Science 2020-09-29 Étienne André , Michał Knapik , Didier Lime , Wojciech Penczek , Laure Petrucci