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We report Molecular Dynamics (MD) simulations of a generic hydrophobic nanopore connecting two reservoirs which are initially at different Na+ concentrations, as in a biological cell. The nanopore is impermeable to water under equilibrium…

Biological Physics · Physics 2009-11-10 J. Dzubiella , R. J. Allen , J. -P. Hansen

We investigate the outflux of ions through the channels in a cell membrane. The channels undergo an open/close cycle according to a periodic schedule. Our study is based both on theoretical considerations relying on homogenization theory,…

Analysis of PDEs · Mathematics 2014-11-21 D. Andreucci , D. Bellaveglia , E. N. M. Cirillo

Ionic liquid gating has become a popular tool for tuning the charge carrier densities of complex oxides. Among these the band insulator SrTiO$_3$ is one of the most extensively studied materials. While experiments have succeeded in inducing…

In this work we report on the role of ion transport for the dynamic behavior of a double barrier quantum mechanical Al/Al$_2$O$_3$/Nb$_{\text{x}}$O$_{\text{y}}$/Au memristive device based on numerical simulations in conjunction with…

Materials Science · Physics 2016-05-31 Sven Dirkmann , Mirko Hansen , Martin Ziegler , Hermann Kohlstedt , Thomas Mussenbrock

An atomic gas subject to a commensurate periodic potential generated by an optical lattice undergoes a superfluid--Mott insulator transition. Confining a strongly interacting gas to one dimension generates an instability where an arbitrary…

Soft Condensed Matter · Physics 2009-11-07 H. P. Büchler , G. Blatter , W. Zwerger

We consider an osmotic equilibrium between bulk solutions of polyelectrolyte bounded by semipermeable membranes and separated by a thin film of salt-free liquid. Although the membranes are neutral, the counter-ions of the polyelectrolyte…

Soft Condensed Matter · Physics 2012-01-19 Olga I. Vinogradova , Lyderic Bocquet , Artem N. Bogdanov , Roumen Tsekov , Vladimir Lobaskin

The physical mechanism underlying the voltage-dependent gating of K channels is usually addressed theoretically using molecular dynamics simulations.However, besides being computationally very expensive, this approach is presently unable to…

Biological Physics · Physics 2020-01-08 Luigi Catacuzzeno , Fabio Franciolini

Disks of two sizes are confined to a long and narrow channel. The axis and the plane of the channel are horizontal. The channel is closed off by pistons that freeze jammed microstates out of loose disk configurations, agitated randomly at…

Soft Condensed Matter · Physics 2025-12-12 Dan Liu , Michael Karbach , Gerhard Müller

We propose a mechanism to control the formation of stable obstructions in two-dimensional micro-channels of variable sections taking advantage of the peculiar clustering property of active systems. Under the activation of the…

Soft Condensed Matter · Physics 2021-01-04 Lorenzo Caprini , Fabio Cecconi , Claudio Maggi , Umberto Marini Bettolo Marconi

We consider two charged semipermeable membranes, which bound bulk electrolyte solutions and are separated by a thin film of salt-free liquid. Small counter-ions permeate into the gap, which leads to a steric charge separation in the system.…

Soft Condensed Matter · Physics 2016-11-23 Salim R. Maduar , Olga I. Vinogradova

Potassium (K-) channels catalyze K+ ion permeation across cellular membranes while simultaneously discriminating their permeation over Na+ ions by more than a factor of a thousand. Structural studies show bare K+ ions occupying the…

Biological Physics · Physics 2009-11-13 Sameer Varma , Susan B. Rempe

We revisit the classical problem of diffusion-limited ion transport to a membrane (or electrode) by considering the effects of charged side walls. Using simple mathematical models and numerical simulations, we identify three basic…

Fluid Dynamics · Physics 2015-05-30 E. Victoria Dydek , Boris Zaltzman , Isaak Rubinstein , D. S. Deng , Ali Mani , Martin Z. Bazant

This paper describes the problem of drift of solid non-interacting particles in a microchannel, which can stick to its walls under the action of the van der Waals forces and break away from the wall due to thermal noise and viscous stresses…

Fluid Dynamics · Physics 2025-11-26 Boris S. Maryshev , Lyudmila S. Klimenko

Ion channels selectively transport ions, yet the underlying mechanisms remain elusive. We propose a physical model based on the Driven Damped Harmonic Oscillator (DDHO), where self-organizing turbulent structures in the ionic flow generate…

Biological Physics · Physics 2025-03-05 Ronald L. Westra

Classical molecular dynamics and electro-diffusion theories have achieved profound success in elucidating ion selectivity and gating mechanisms. However, reconciling strict selectivity with high flux permeation in Angstrom-scaled biological…

Optics · Physics 2026-03-10 Bin Zhou , Yangmei Li , Ziyi Zhang , Yindong Huang , Zuoxian Xiang , Chao Chang

We investigate magnetoresistance of a square array of superconducting islands placed on a normal metal, which offers a unique tunable laboratory for realizing and exploring quantum many-body systems and their dynamics. A vortex Mott…

We use linear stability analysis and hybrid lattice Boltzmann simulations to study the dynamical behaviour of an active nematic confined in a channel made of viscoelastic material. We find that the quiescent, ordered active nematic is…

Soft Condensed Matter · Physics 2023-12-20 Francesco Mori , Saraswat Bhattacharyya , Julia M. Yeomans , Sumesh P. Thampi

Ionic gating is a powerful technique for tuning the physical properties of a material via electric field-induced charge doping, but is prone to introduce extrinsic disorder and undesired electrochemical modifications in the gated material…

Membranes selective to ions of the same charge are increasingly sought for wastewater processing and valuable element recovery. However, while narrow channels are known to be essential, other membrane parameters remain difficult to identify…

The confinement of an ionic liquid between charged solid surfaces is treated using an exactly solvable 1D Coulomb gas model. The theory highlights the importance of two dimensionless parameters: the fugacity of the ionic liquid, and the…

Soft Condensed Matter · Physics 2014-09-08 Alpha A Lee , Dominic Vella , Susan Perkin , Alain Goriely