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Understanding design principles of molecular interaction networks is an important goal of molecular systems biology. Some insights have been gained into features of their network topology through the discovery of graph theoretic patterns…

Molecular Networks · Quantitative Biology 2013-01-18 David Murrugarra , Reinhard Laubenbacher

We report the results of carrying out a large number of simulations on a coevolutionary model of multispecies communities. A wide range of parameter values were investigated which allowed a rather complete picture of the change in behaviour…

Populations and Evolution · Quantitative Biology 2007-05-23 Christopher Quince , Paul Higgs , Alan McKane

This is the second of two papers dedicated to the relationship between population models of competition and biodiversity. Here we consider species assembly models where the population dynamics is kept far from fixed points through the…

Populations and Evolution · Quantitative Biology 2007-05-23 Ugo Bastolla , Michael Lässig , Susanna C. Manrubia , Angelo Valleriani

We consider networks of dynamical units that evolve in time according to different laws, and are coupled to each other in highly irregular ways. Studying how to steer the dynamics of such systems towards a desired evolution is of great…

Physics and Society · Physics 2020-12-01 Ricardo Gutiérrez , Massimo Materassi , Stefano Focardi , Stefano Boccaletti

This study relates the local property of node dominance to local and global properties of a network. Iterative removal of dominated nodes yields a distributed algorithm for computing a core-periphery decomposition of a social network, where…

Social and Information Networks · Computer Science 2015-09-25 Jennifer Gamble , Harish Chintakunta , Adam Wilkerson , Hamid Krim , Ananthram Swami

Better understanding the natural world is a crucial task with a wide range of applications. In environments with close proximity between humans and animals, such as zoos, it is essential to better understand the causes behind animal…

The rich set of interactions between individuals in the society results in complex community structure, capturing highly connected circles of friends, families, or professional cliques in a social network. Thanks to frequent changes in the…

Methodology · Statistics 2007-12-12 Gergely Palla , Albert-Laszlo Barabasi , Tamas Vicsek

Combining social network analysis with personal interviews, the paper examines how the social structure and internal composition of three Africa-focused international research networks contributes to their resilience. It shows that research…

Social and Information Networks · Computer Science 2023-11-16 Olivier J. Walther , Rafael Prieto-Curiel , Erica Odera

Biological networks have evolved to be highly functional within uncertain environments while remaining extremely adaptable. One of the main contributors to the robustness and evolvability of biological networks is believed to be their…

Molecular Networks · Quantitative Biology 2008-02-14 Arend Hintze , Christoph Adami

Swarm intelligence is widely recognized as a powerful paradigm of self-organized optimization, with numerous examples of successful applications in distributed artificial intelligence. However, the role of physical interactions in the…

Physics and Society · Physics 2008-10-28 Karsten Peters , Anders Johansson , Audrey Dussutour , Dirk Helbing

Collective, especially group-based, managerial decision making is crucial in organizations. Using an evolutionary theoretic approach to collective decision making, agent-based simulations were conducted to investigate how human collective…

Multiagent Systems · Computer Science 2019-02-20 Shelley D. Dionne , Hiroki Sayama , Francis J. Yammarino

Species-rich communities, such as the microbiota or microbial ecosystems, provide key functions for human health and climatic resilience. Increasing effort is being dedicated to design experimental protocols for selecting community-level…

Populations and Evolution · Quantitative Biology 2023-06-22 Jules Fraboul , Giulio Biroli , Silvia De Monte

Models of cooperation grounded on social networks and on the ability of individuals to choose actions and partners aim to describe human social behavior. Extensive computer simulations of these models give important insight in the social…

Physics and Society · Physics 2007-05-23 Victor M. Eguluz , Martin G. Zimmermann , Camilo J. Cela-Conde , Maxi San Miguel

This paper presents a unified framework for analyzing the input-output behavior of discrete time complex networks viewed as open systems. Importantly, we focus on systems that are inherently modeled in discrete time-such as opinion…

Physics and Society · Physics 2025-11-25 Amirhossein Nazerian , MAlbor Asllani , Melvyn Tyloo , Francesco Sorrentino

Social animals self-organise to create groups to increase protection against predators and productivity. One-to-one interactions are the building blocks of these emergent social structures and may correspond to friendship, grooming,…

Physics and Society · Physics 2021-06-02 Luis E C Rocha , Jan Ryckebusch , Koen Schoors , Matthew Smith

Many biological regulatory systems process signals out of steady state and respond with a physiological delay. A simple model of regulation which respects these features shows how the ability of a delayed output to transmit information is…

Molecular Networks · Quantitative Biology 2013-08-13 Francesca Mancini , Chris H. Wiggins , Matteo Marsili , Aleksandra M. Walczak

Network ecology is a rising field of quantitative biology representing ecosystems as complex networks. A suitable example is parasite spreading: several parasites may be transmitted among their hosts through different mechanisms, each one…

Quantitative Methods · Quantitative Biology 2016-09-12 Massimo Stella , Cecilia S. Andreazzi , Sanja Selakovic , Alireza Goudarzi , Alberto Antonioni

Social institutions are systems of shared norms and rules that regulate people's behaviors, often emerging without external enforcement. They provide criteria to distinguish cooperation from defection and establish rules to sustain…

Physics and Society · Physics 2025-04-15 Kenji Itao , Kunihiko Kaneko

The competition for resources is a defining feature of microbial communities. In many contexts, from soils to host-associated communities, highly diverse microbes are organized into metabolic groups or guilds with similar resource…

Physics and Society · Physics 2025-05-05 Xiaowen Chen , Kyle Crocker , Seppe Kuehn , Aleksandra M. Walczak , Thierry Mora

Transformations to create more sustainable social-ecological systems are urgently needed. Structural change is a feature of transformations of social-ecological systems that is of critical importance but is little understood. Here, we…

Adaptation and Self-Organizing Systems · Physics 2017-04-21 Steven J. Lade , Örjan Bodin , Jonathan F. Donges , Elin Enfors Kautsky , Diego Galafassi , Per Olsson , Maja Schlüter