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Computing the Euler genus of a graph is a fundamental problem in graph theory and topology. It has been shown to be NP-hard by [Thomassen '89] and a linear-time fixed-parameter algorithm has been obtained by [Mohar '99]. Despite extensive…

Data Structures and Algorithms · Computer Science 2014-12-05 Ken-ichi Kawarabayashi , Anastasios Sidiropoulos

We introduce a compressed suffix array representation that, on a text $T$ of length $n$ over an alphabet of size $\sigma$, can be built in $O(n)$ deterministic time, within $O(n\log\sigma)$ bits of working space, and counts the number of…

Data Structures and Algorithms · Computer Science 2017-09-05 J. Ian Munro , Gonzalo Navarro , Yakov Nekrich

In this paper we give instructions on how to write a minimalist grammar (MG). In order to present the instructions as an algorithm, we use a variant of context free grammars (CFG) as an input format. We can exclude overgeneration, if the…

Computation and Language · Computer Science 2023-11-06 Isidor Konrad Maier , Johannes Kuhn , Jesse Beisegel , Markus Huber-Liebl , Matthias Wolff

We consider document listing on string collections, that is, finding in which strings a given pattern appears. In particular, we focus on repetitive collections: a collection of size $N$ over alphabet $[1,\sigma]$ is composed of $D$ copies…

Data Structures and Algorithms · Computer Science 2018-11-15 Gonzalo Navarro

Simon's congruence $\sim_k$ is defined as follows: two words are $\sim_k$-equivalent if they have the same set of subsequences of length at most $k$. We propose an algorithm which computes, given two words $s$ and $t$, the largest $k$ for…

Formal Languages and Automata Theory · Computer Science 2021-03-16 Pawel Gawrychowski , Maria Kosche , Tore Koss , Florin Manea , Stefan Siemer

We study regular expression membership testing: Given a regular expression of size $m$ and a string of size $n$, decide whether the string is in the language described by the regular expression. Its classic $O(nm)$ algorithm is one of the…

Data Structures and Algorithms · Computer Science 2016-11-08 Karl Bringmann , Allan Grønlund , Kasper Green Larsen

We consider the problem of encoding a string of length $n$ from an integer alphabet of size $\sigma$ so that access and substring equality queries (that is, determining the equality of any two substrings) can be answered efficiently. Any…

Data Structures and Algorithms · Computer Science 2020-05-12 Nicola Prezza

Based on the Breslauer-Italiano online suffix tree construction algorithm (2013) with double logarithmic worst-case guarantees on the update time per letter, we develop near-real-time algorithms for several classical problems on strings,…

Data Structures and Algorithms · Computer Science 2026-02-18 Dominik Köppl , Gregory Kucherov

We prove that a uniformly random automaton with $n$ states on a 2-letter alphabet has a synchronizing word of length $O(n^{1/2}\log n)$ with high probability (w.h.p.). That is to say, w.h.p. there exists a word $\omega$ of such length, and…

Formal Languages and Automata Theory · Computer Science 2023-07-04 Guillaume Chapuy , Guillem Perarnau

We present the first worst-case linear-time algorithm to compute the Lempel-Ziv 78 factorization of a given string over an integer alphabet. Our algorithm is based on nearest marked ancestor queries on the suffix tree of the given string.…

Data Structures and Algorithms · Computer Science 2015-02-02 Yuto Nakashima , Tomohiro I , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda

In the setting of minimal local grammar-based coding, the input string is represented as a grammar with the minimal output length defined via simple symbol-by-symbol encoding. This paper discusses four contributions to this field. First, we…

Information Theory · Computer Science 2025-04-17 Łukasz Dębowski

Monotonicity is a simple yet significant qualitative characteristic. We consider the problem of segmenting a sequence in up to K segments. We want segments to be as monotonic as possible and to alternate signs. We propose a quality metric…

Databases · Computer Science 2009-09-01 Daniel Lemire , Martin Brooks , Yuhong Yan

This paper provides a reference description, in the form of a deduction system, of Earley's (1970) context-free parsing algorithm with various speed-ups. Our presentation includes a known worst-case runtime improvement from Earley's $O…

Computation and Language · Computer Science 2023-07-07 Andreas Opedal , Ran Zmigrod , Tim Vieira , Ryan Cotterell , Jason Eisner

A factor $u$ of a word $w$ is a cover of $w$ if every position in $w$ lies within some occurrence of $u$ in $w$. A word $w$ covered by $u$ thus generalizes the idea of a repetition, that is, a word composed of exact concatenations of $u$.…

Data Structures and Algorithms · Computer Science 2014-01-03 Tomasz Kociumaka , Jakub Radoszewski , Wojciech Rytter , Solon P. Pissis , Tomasz Waleń

Tree-adjoining grammars are a generalization of context-free grammars that are well suited to model human languages and are thus popular in computational linguistics. In the tree-adjoining grammar recognition problem, given a grammar…

Computational Complexity · Computer Science 2018-03-05 Karl Bringmann , Philip Wellnitz

We consider the problem of {\em restructuring} compressed texts without explicit decompression. We present algorithms which allow conversions from compressed representations of a string $T$ produced by any grammar-based compression…

Data Structures and Algorithms · Computer Science 2011-07-15 Keisuke Goto , Shirou Maruyama , Shunsuke Inenaga , Hideo Bannai , Hiroshi Sakamoto , Masayuki Takeda

We study algorithms for approximating pairwise similarity matrices that arise in natural language processing. Generally, computing a similarity matrix for $n$ data points requires $\Omega(n^2)$ similarity computations. This quadratic…

Machine Learning · Computer Science 2022-04-28 Archan Ray , Nicholas Monath , Andrew McCallum , Cameron Musco

A string $w$ is called a minimal absent word (MAW) for a string $S$ if $w$ does not occur as a substring in $S$ and all proper substrings of $w$ occur in $S$. MAWs are well-studied combinatorial string objects that have potential…

Data Structures and Algorithms · Computer Science 2023-08-01 Kouta Okabe , Takuya Mieno , Yuto Nakashima , Shunsuke Inenaga , Hideo Bannai

Arising from structural graph theory, treewidth has become a focus of study in fixed-parameter tractable algorithms in various communities including combinatorics, integer-linear programming, and numerical analysis. Many NP-hard problems…

Data Structures and Algorithms · Computer Science 2023-09-14 Sally Dong , Yin Tat Lee , Guanghao Ye

We are concerned with estimating alphabet size $N$ from a stream of symbols taken uniformly at random from that alphabet. We define and analyze a memory-restricted variant of an algorithm that have been earlier proposed for this purpose.…

Data Structures and Algorithms · Computer Science 2017-11-22 Philip Ginzboorg