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The kinesin superfamily of motor proteins is a major driver of anterograde transport of vesicles and organelles within eukaryotic cells via microtubules. Numerous studies have elucidated the step-size, velocities, forces, and navigation…

Biomolecules · Quantitative Biology 2024-10-07 Mason Grieb , Nimisha Krishnan , Jennifer L. Ross

Models based on surfactant driven instabilities have been employed to describe pattern formation by swarming bacteria. However, by definition, such models cannot account for the effect of bacterial sensing and decision making. Here we…

Microorganisms are able to overcome the thermal randomness of their surroundings by harvesting energy to navigate in viscous fluid environments. In a similar manner, synthetic colloidal microswimmers are capable of mimicking complex…

The paper discusses the natural emergence of directed motion in a dimer system due to a structural symmetry breaking. A generalised solution is obtained for the transport of such a system which is driven entirely by bath fluctuations. The…

Statistical Mechanics · Physics 2020-05-26 Mayank Sharma , A. Bhattacharyay

We numerically study the dynamics of run-and-tumble particles confined in two chambers connected by thin channels. Two dominant dynamical behaviors emerge: (i) an oscillatory pumping state, in which particles periodically fill the two…

Soft Condensed Matter · Physics 2015-11-04 M. Paoluzzi , R. Di Leonardo , L. Angelani

In this Letter, we study the collective behaviour of a large number of self-propelled microswimmers immersed in a fluid. Using unprecedently large-scale lattice Boltzmann simulations, we reproduce the transition to bacterial turbulence. We…

Soft Condensed Matter · Physics 2017-07-17 Joakim Stenhammar , Cesare Nardini , Rupert W. Nash , Davide Marenduzzo , Alexander Morozov

We present a minimal physical model for the flagellar motor that enables bacteria to swim. Our model explains the experimentally measured torque-speed relationship of the proton-driven E. coli motor at various pH and temperature conditions.…

Subcellular Processes · Quantitative Biology 2009-12-11 Thierry Mora , Howard Yu , Ned S. Wingreen

Mathematical models have been widely used to describe the collective movement of bacteria by chemotaxis. In particular, bacterial concentration waves traveling in a narrow channel have been experimentally observed and can be precisely…

Analysis of PDEs · Mathematics 2016-04-15 Casimir Emako , Charlène Gayrard , Axel Buguin , Luís Neves de Almeida , Nicolas Vauchelet

Long, flexible fibers transported by a turbulent channel flow sample non-linear variations of the fluid velocity along their length. As the fibers tumble and collide with the boundaries, they bounce off with an impulse that propels them…

Fluid Dynamics · Physics 2023-04-20 Jeremie Bec , Christophe Brouzet , Christophe Henry

Many motile microorganisms react to environmental light cues with a variety of motility responses guiding cells towards better conditions for survival and growth. The use of spatial light modulators could help to elucidate the mechanisms of…

Interaction of swimming bacteria with flows controls their ability to explore complex environments, crucial to many societal and environmental challenges and relevant for microfluidic applications as cell sorting. Combining experimental,…

Soft Condensed Matter · Physics 2020-09-03 Guangyin Jing , Andreas Zöttl , Éric Clément , Anke Lindner

Bacteria suspension exhibits a wide range of collective phenomena arising from interactions between individual cells. Here we show Serratia marcescens cells near an air-liquid interface spontaneously aggregate into dynamic clusters through…

Soft Condensed Matter · Physics 2015-09-30 Xiao Chen , Xiang Yang , Mingcheng Yang , Hepeng Zhang

The natural habitats of microorganisms in the human microbiome and ocean and soil ecosystems are full of colloids and macromolecules, which impart non-Newtonian flow properties drastically affecting the locomotion of swimming…

Soft Condensed Matter · Physics 2022-04-01 Shashank Kamdar , Seunghwan Shin , Lorraine F. Francis , Xinliang Xu , Xiang Cheng

E. coli bacteria swim following a run and tumble pattern. In the run state all flagella join in a single helical bundle that propels the cell body along approximately straight paths. When one or more flagellar motors reverse direction the…

Soft Condensed Matter · Physics 2015-07-01 S. Bianchi , F. Saglimbeni , A. Lepore , R. Di Leonardo

We report the selective stabilization of chiral rotational direction of bacterial vortices, from turbulent bacterial suspension, in achiral circular microwells sealed by an oil-water interface. This broken-symmetry, originating from the…

Soft Condensed Matter · Physics 2021-09-29 Kazusa Beppu , Ziane Izri , Tasuku Sato , Yoko Yamanishi , Yutaka Sumino , Yusuke T. Maeda

We scrutinize the temporally-resolved speed of active cargo transport in living cells, and show intermittent bursting motions. These nonlinear fluctuations follow a scaling law over several decades of time and space, the statistical…

Subcellular Processes · Quantitative Biology 2015-06-16 Bo Wang , James Kuo , Steve Granick

The ability of many living systems to actively self-propel underlies critical biomedical, environmental, and industrial processes. While such active transport is well-studied in uniform settings, environmental complexities such as geometric…

Biological Physics · Physics 2021-08-23 Alejandro Martínez-Calvo , Carolina Trenado-Yuste , Sujit S. Datta

Eukaryotic cells and intracellular pathogens such as bacteria or viruses utilize the actin polymerization machinery to propel themselves forward. Thereby, the onset of motion and choice of direction may be the result of a spontaneous…

Soft Condensed Matter · Physics 2009-09-04 Karin John , Denis Caillerie , Philippe Peyla , Mourad Ismail , Annie Raoult , Jacques Prost

We characterize cell motion in experiments and show that the transition to collective motion in colonies of gliding bacterial cells confined to a monolayer appears through the organization of cells into larger moving clusters. Collective…

The motion of a large, neutrally buoyant, particle, freely advected by a turbulent flow is determined experimentally. We demonstrate that both the translational and angular accelerations exhibit very wide probability distributions, a…