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Ecological theory predicts that the soil seed bank stabilises the composition of annual plant communities in the face of environmental variability. However, long-term data on the community dynamics in the seed bank and the standing…

Populations and Evolution · Quantitative Biology 2021-03-09 Niv DeMalach , Jaime Kigel , Marcelo Sternberg

This study investigates whether coupling crop modeling and machine learning (ML) improves corn yield predictions in the US Corn Belt. The main objectives are to explore whether a hybrid approach (crop modeling + ML) would result in better…

Quantitative Methods · Quantitative Biology 2021-03-03 Mohsen Shahhosseini , Guiping Hu , Sotirios V. Archontoulis , Isaiah Huber

Environmental stresses such as drought and heat can cause substantial yield loss in agriculture. As such, hybrid crops that are tolerant to drought and heat stress would produce more consistent yields compared to the hybrids that are not…

Machine Learning · Computer Science 2019-12-06 Saeed Khaki , Zahra Khalilzadeh , Lizhi Wang

Producing higher-quality crops within shortened breeding cycles ensures global food availability and security, but this improvement intensifies logistical and productivity challenges for seed industries in the year-round breeding process…

Machine Learning · Computer Science 2022-07-05 Javad Ansarifar , Faezeh Akhavizadegan , Lizhi Wang

Concomitant with the evolution of biological diversity must have been the evolution of mechanisms that facilitate evolution, due to the essentially infinite complexity of protein sequence space. We describe how evolvability can be an object…

Populations and Evolution · Quantitative Biology 2009-11-10 David J. Earl , Michael W. Deem

Climate change is posing new challenges to crop-related concerns including food insecurity, supply stability and economic planning. As one of the central challenges, crop yield prediction has become a pressing task in the machine learning…

Machine Learning · Computer Science 2022-01-25 Joshua Fan , Junwen Bai , Zhiyun Li , Ariel Ortiz-Bobea , Carla P. Gomes

Maintaining genetic diversity as a means to avoid premature convergence is critical in Genetic Programming. Several approaches have been proposed to achieve this, with some focusing on the mating phase from coupling dissimilar solutions to…

Neural and Evolutionary Computing · Computer Science 2023-03-31 José Maria Simões , Nuno Lourenço , Penousal Machado

Numerous solutions for yield estimation are either based on data-driven models, or on crop-simulation models (CSMs). Researchers tend to build data-driven models using nationwide crop information databases provided by agencies such as the…

Machine Learning · Computer Science 2023-06-21 Renato Luiz de Freitas Cunha , Bruno Silva , Priscilla Barreira Avegliano

Temperature fluctuations significantly affect microorganism growth and pest activities in grain pile, precise monitoring and forecasting temperature of stored grain are essential for maintaining the quality and safety of grain storage. This…

Computational Engineering, Finance, and Science · Computer Science 2024-04-18 Donghao Chen , Binkun Liu

Sellers of crop seeds need to plan for the variety and quantity of seeds to stock at least a year in advance. There are a large number of seed varieties of one crop, and each can perform best under different growing conditions. Given the…

Machine Learning · Computer Science 2021-01-13 Yunhe Feng , Wenjun Zhou

Understanding the mechanisms of species coexistence has always been a fundamental topic in ecology. Classical theory predicts that interspecific competition may select for traits that stabilize niche differences, although recent work shows…

Populations and Evolution · Quantitative Biology 2023-05-16 José F. Fontanari , Margarida Matos , Mauro Santos

Soybean production is susceptible to biotic and abiotic stresses, exacerbated by extreme weather events. Water limiting stress, i.e. drought, emerges as a significant risk for soybean production, underscoring the need for advancements in…

Bio-hybrid systems---close couplings of natural organisms with technology---are high potential and still underexplored. In existing work, robots have mostly influenced group behaviors of animals. We explore the possibilities of mixing…

Neural and Evolutionary Computing · Computer Science 2018-04-20 Mostafa Wahby , Mary Katherine Heinrich , Daniel Nicolas Hofstadler , Payam Zahadat , Sebastian Risi , Phil Ayres , Thomas Schmickl , Heiko Hamann

The unwelcome evolution of malignancy during cancer progression emerges through a selection process in a complex heterogeneous population structure. In the present work, we investigate evolutionary dynamics in a phenotypically heterogeneous…

Populations and Evolution · Quantitative Biology 2018-02-07 Ali Mahdipour Shirayeh , Kamran Kaveh , Mohammad Kohandel , Siv Sivaloganathan

Geographic ranges of communities of species evolve in response to environmental, ecological, and evolutionary forces. Understanding the effects of these forces on species' range dynamics is a major goal of spatial ecology. Previous…

Populations and Evolution · Quantitative Biology 2022-02-02 Farshad Shirani , Judith R. Miller

Biological aging is characterized by an age-dependent increase in the probability of death and by a decrease in the reproductive capacity. Individual age-dependent rates of survival and reproduction have a strong impact on population…

Populations and Evolution · Quantitative Biology 2016-02-03 Arian Šajina , Dario Riccardo Valenzano

Biological systems are modular, and this modularity affects the evolution of biological systems over time and in different environments. We here develop a theory for the dynamics of evolution in a rugged, modular fitness landscape. We show…

Populations and Evolution · Quantitative Biology 2015-06-23 Jeong-Man Park , Man Chen , Dong Wang , Michael W. Deem

Understanding and accurately predicting within-field spatial variability of crop yield play a key role in site-specific management of crop inputs such as irrigation water and fertilizer for optimized crop production. However, such a task is…

Machine Learning · Computer Science 2018-11-19 Long Nguyen , Jia Zhen , Zhe Lin , Hanxiang Du , Zhou Yang , Wenxuan Guo , Fang Jin

Bacterial chemotaxis systems are as diverse as the environments that bacteria inhabit, but how much environmental variation can cells tolerate with a single system? Diversification of a single chemotaxis system could serve as an…

Populations and Evolution · Quantitative Biology 2015-11-30 Nicholas W Frankel , William Pontius , Yann S Dufour , Junjiajia Long , Luis Hernandez- Nunez , Thierry Emonet

In contrast to the rapid digitalization of several industries, agriculture suffers from low adoption of smart farming tools. While AI-driven digital agriculture tools can offer high-performing predictive functionalities, they lack tangible…

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