Related papers: A Subquadratic Algorithm for Minimum Palindromic F…

In this paper we investigate the problem of building a static data structure that represents a string s using space close to its compressed size, and allows fast access to individual characters of s. This type of structures was investigated…

We propose a new finding $k$-minima algorithm and prove that its query complexity is $\mathcal{O}(\sqrt{kN})$, where $N$ is the number of data indices. Though the complexity is equivalent to that of an existing method, the proposed is…

This paper investigates the number of quantum queries made to solve the problem of reconstructing an unknown string from its substrings in a certain query model. More concretely, the goal of the problem is to identify an unknown string $S$…

A trie $\mathcal{T}$ is a rooted tree such that each edge is labeled by a single character from the alphabet, and the labels of out-going edges from the same node are mutually distinct. Given a trie $\mathcal{T}$ with $n$ edges, we show how…

This paper extends the problem of 2-dimensional palindrome search into the area of approximate matching. Using the Hamming distance as the measure, we search for 2D palindromes that allow up to $k$ mismatches. We consider two different…

We present the first in-place algorithm for sorting an array of size n that performs, in the worst case, at most O(n log n) element comparisons and O(n) element transports. This solves a long-standing open problem, stated explicitly, e.g.,…

Let $S_{T}(k)$ denote the set of distinct substrings of length $k$ in a string $T$, then the $k$-th substring complexity is defined by its cardinality $|S_{T}(k)|$. Recently, $\delta = \max \{ |S_{T}(k)| / k : k \ge 1 \}$ is shown to be a…

Bille and G{\o}rtz (2011) recently introduced the problem of substring range counting, for which we are asked to store compactly a string $S$ of $n$ characters with integer labels in ([0, u]), such that later, given an interval ([a, b]) and…

Lexicographically minimal string rotation is a fundamental problem in string processing that has recently garnered significant attention in quantum computing. Near-optimal quantum algorithms have been proposed for solving this problem,…

Suppose a language $L$ can be decided by a bounded-error randomized algorithm that runs in space $S$ and time $n \cdot \text{poly}(S)$. We give a randomized algorithm for $L$ that still runs in space $O(S)$ and time $n \cdot \text{poly}(S)$…

We consider a monotone submodular maximization problem whose constraint is described by a logic formula on a graph. Formally, we prove the following three `algorithmic metatheorems.' (1) If the constraint is specified by a monadic…

Given a multiset $X=\{x_1,..., x_n\}$ of real numbers, the {\it floating-point set summation} problem asks for $S_n=x_1+...+x_n$. Let $E^*_n$ denote the minimum worst-case error over all possible orderings of evaluating $S_n$. We prove that…

Designing short DNA words is a problem of constructing a set (i.e., code) of n DNA strings (i.e., words) with the minimum length such that the Hamming distance between each pair of words is at least k and the n words satisfy a set of…

We present a simple randomized polynomial time algorithm to approximate the mixed discriminant of $n$ positive semidefinite $n \times n$ matrices within a factor $2^{O(n)}$. Consequently, the algorithm allows us to approximate in randomized…

We consider the complexity for computing the approximate sum $a_1+a_2+...+a_n$ of a sorted list of numbers $a_1\le a_2\le ...\le a_n$. We show an algorithm that computes an $(1+\epsilon)$-approximation for the sum of a sorted list of…

We consider the problem of querying a string (or, a database) of length $N$ bits to determine all the locations where a substring (query) of length $M$ appears either exactly or is within a Hamming distance of $K$ from the query. We assume…

Sublinear time quantum algorithms have been established for many fundamental problems on strings. This work demonstrates that new, faster quantum algorithms can be designed when the string is highly compressible. We focus on two popular and…

Suppose that we are given a string $s$ of length $n$ over an alphabet $\{0,1,\ldots,n^{O(1)}\}$ and $\delta$ is the string complexity of $s$, a known compression measure. We describe an index on $s$ with $O(\delta\log\frac{n}{\delta})$…

We show that both the Lempel Ziv 77- and the 78-factorization of a text of length $n$ on an integer alphabet of size $\sigma$ can be computed in $O(n \lg \lg \sigma)$ time (linear time if we allow randomization) using $O(n \lg \sigma)$ bits…

We present and analyse a Monte-Carlo algorithm to compute the minimal polynomial of an $n\times n$ matrix over a finite field that requires $O(n^3)$ field operations and O(n) random vectors, and is well suited for successful practical…