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Biochemical reaction systems may be viewed as discrete event processes characterized by a number of states and state transitions. These systems may be modeled as state transition systems with transitions representing individual reaction…

Chemical Physics · Physics 2017-08-23 Scott M. Bugenhagen , Daniel A. Beard

These short lecture notes contain a not too technical introduction to point processes on the time line. The focus lies on defining these processes using the conditional intensity function. Furthermore, likelihood inference, methods of…

Methodology · Statistics 2018-06-04 Jakob Gulddahl Rasmussen

We briefly review two concepts of time - the usual time associated with "being" and more recent ideas, answering to the description of "becoming". The approximation involved in the former is examined. Finally we argue that it is…

General Physics · Physics 2008-09-04 Burra G. Sidharth

Bifurcations can cause dynamical systems with slowly varying parameters to transition to far-away attractors. The terms ``critical transition'' or ``tipping point'' have been used to describe this situation. Critical transitions have been…

Dynamical Systems · Mathematics 2015-03-17 Christian Kuehn

Physical systems with many degrees of freedom can often be understood in terms of transitions between a small number of metastable states. For time-homogeneous systems with short-term memory these transitions are fully characterized by a…

Molecular Networks · Quantitative Biology 2015-06-03 Nils B. Becker , Pieter Rein ten Wolde

We depend on the safe, reliable, and timely operation of cyber-physical systems ranging from smart grids to avionics components. Many of them involve time-dependent behaviours and are subject to randomness. Modelling languages and…

Logic in Computer Science · Computer Science 2022-03-21 Arnd Hartmanns

Many biological and medical questions can be modeled using time-to-event data in finite-state Markov chains, with the phase-type distribution describing intervals between events. We solve the inverse problem: given a phase-type…

Dynamical Systems · Mathematics 2024-11-19 Ovidiu Radulescu , Dima Grigoriev , Matthias Seiss , Maria Douaihy , Mounia Lagha , Edouard Bertrand

This paper describes a programme to study the computing model in CMS after the next long shutdown near the end of the decade.

Distributed, Parallel, and Cluster Computing · Computer Science 2016-01-20 Lothar Bauerdick , Brian Bockelman , Peter Elmer , Stephen Gowdy , Matevz Tadel , Frank Wuerthwein

We analyst in detail a new approach to the monitoring and forecasting of the onset of transitions in high dimensional complex systems (see Phys. Rev. Lett . vol. 113, 264102 (2014)) by application to the Tangled Nature Model of evolutionary…

Adaptation and Self-Organizing Systems · Physics 2015-08-03 Duccio Piovani , Jelena Grujic , Henrik Jeldtoft Jensen

A time-space traffic (TS) diagram, which presents traffic states in time-space cells with color, is an important traffic analysis and visualization tool. Despite its importance for transportation research and engineering, most TS diagrams…

Computer Vision and Pattern Recognition · Computer Science 2023-09-18 Zhengbing He

Time series are ubiquitous in our data rich world. In what follows I will describe how ideas from dynamical systems and topological data analysis can be combined to gain insights from time-varying data. We will see several applications to…

Algebraic Topology · Mathematics 2018-12-14 Jose A. Perea

This paper introduces an explicit reference governor approach for controlling time delay linear systems subject to state and input constraints. The proposed framework relies on suitable invariant sets that can be built using both…

Systems and Control · Computer Science 2017-12-25 Marco M. Nicotra , Tam Nguyen , Emanuele Garone , Ilya V. Kolmanovsky

This report aims at presenting (yet) a(nother) methodology to design and implement a linear controller for linear dynamical systems on practical applications. The specificity of this report is that authors try to cover (obviously in a non…

Systems and Control · Electrical Eng. & Systems 2020-03-25 Charles Poussot-Vassal , Pierre Vuillemin

Multistate models offer a powerful framework for studying disease processes and can be used to formulate intensity-based and more descriptive marginal regression models. They also represent a natural foundation for the construction of joint…

Autonomous agents are often tasked with operating in an area where feedback is unavailable. Inspired by such applications, this paper develops a novel switched systems-based control method for uncertain nonlinear systems with temporary loss…

Systems and Control · Computer Science 2018-03-16 Hsi-Yuan Chen , Zachary I. Bell , Patryk Deptula , Warren E. Dixon

Real world evolves in continuous time but computations are done from finite samples. Therefore, we study algorithms using finite observations in continuous-time linear dynamical systems. We first study the system identification problem, and…

Systems and Control · Electrical Eng. & Systems 2025-09-30 Hongyi Zhou , Jingwei Li , Jingzhao Zhang

We provide a brief tutorial on the use of concentration inequalities as they apply to system identification of state-space parameters of linear time invariant systems, with a focus on the fully observed setting. We draw upon tools from the…

Optimization and Control · Mathematics 2019-08-30 Nikolai Matni , Stephen Tu

We propose directed time series regression, a new approach to estimating parameters of time-series models for use in certainty equivalent model predictive control. The approach combines merits of least squares regression and empirical…

Machine Learning · Computer Science 2012-07-02 Yi-Hao Kao , Benjamin Van Roy

We present pState, a tool for developing "complex" embedded systems by integrating validation into the design process. The goal is to reduce validation time. To this end, qualitative and quantitative properties are specified in system…

Software Engineering · Computer Science 2015-08-18 Bojan Nokovic , Emil Sekerinski

Transformer-based foundation models have emerged as a dominant paradigm in time series analysis, offering unprecedented capabilities in tasks such as forecasting, anomaly detection, classification, trend analysis and many more time series…

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