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Phylogenetic trees represent the evolutionary relationships between extant lineages, where extinct or non-sampled lineages are omitted. Extending the work of Stadler and collaborators, this paper focuses on the branch lengths in…

Populations and Evolution · Quantitative Biology 2025-10-16 Tobias Dieselhorst , Johannes Berg

Evolutionary graph theory studies the evolutionary dynamics in a population structure given as a connected graph. Each node of the graph represents an individual of the population, and edges determine how offspring are placed. We consider…

Neural and Evolutionary Computing · Computer Science 2017-06-22 Krishnendu Chatterjee , Rasmus Ibsen-Jensen , Martin A. Nowak

A random graph evolution based on the interactions of N vertices is studied. During the evolution both the preferential attachment method and the uniform choice of vertices are allowed. The weight of a vertex means the number of its…

Probability · Mathematics 2014-05-07 István Fazekas , Bettina Porvázsnyik

We consider the motion of a particle on a Galton Watson tree, when the probabilities of jumping from a vertex to any one of its neighbours is determined by a random process. Given the tree, positive weights are assigned to the edges in such…

Probability · Mathematics 2016-05-02 A. D. Barbour , A. Collevecchio

We study effective randomness-preserving transformations of path-incompressible trees. Some path-incompressible trees with infinitely many paths do not compute perfect path-random trees with computable oracle-use. Sparse perfect…

Combinatorics · Mathematics 2024-01-11 George Barmpalias , Xiaoyan Zhang

This article studies vertex reinforced random walks that are non-backtracking (denoted VRNBW), i.e. U-turns forbidden. With this last property and for a strong reinforcement, the emergence of a path may occur with positive probability.…

Probability · Mathematics 2017-08-02 Line C. Le Goff , Olivier Raimond

Consider a random recusive tree with n vertices. We show that the number of vertices with even depth is asymptotically normal as n tends to infinty. The same is true for the number of vertices of depth divisible by m for m=3, 4 or 5; in all…

Probability · Mathematics 2007-05-23 Svante Janson

We introduce a new type of preferential attachment tree that includes choices in its evolution, like with Achlioptas processes. At each step in the growth of the graph, a new vertex is introduced. Two possible neighbor vertices are selected…

Probability · Mathematics 2014-02-18 Yury Malyshkin , Elliot Paquette

Let $T$ be the regular tree in which every vertex has exactly $d\ge 3$ neighbours. Run a branching random walk on $T$, in which at each time step every particle gives birth to a random number of children with mean $d$ and finite variance,…

Probability · Mathematics 2019-11-19 Matthew I. Roberts

We study the spreading of families in two-dimensional multispecies predator-prey systems, in which species cyclically dominate each other. In each time step randomly chosen individuals invade one of the nearest sites of the square lattice…

Populations and Evolution · Quantitative Biology 2009-11-10 Maria Ravasz , Gyorgy Szabo , Attila Szolnoki

We study the Tree Builder Random Walk: a randomly growing tree, built by a walker as she is walking around the tree. Namely, at each time $n$, she adds a leaf to her current vertex with probability $p_n \asymp n^{-\gamma}$, $\gamma\in…

Probability · Mathematics 2024-12-09 Janos Engländer , Giulio Iacobelli , Gábor Pete , Rodrigo Ribeiro

Information theoretic analysis of large evolved programs produced by running genetic programming for up to a million generations has shown even functions as smooth and well behaved as floating point addition and multiplication loose entropy…

Neural and Evolutionary Computing · Computer Science 2021-12-03 W. B. Langdon

We investigate the following vertex percolation process. Starting with a random regular graph of constant degree, delete each vertex independently with probability p, where p=n^{-alpha} and alpha=alpha(n) is bounded away from 0. We show…

Combinatorics · Mathematics 2007-05-23 Catherine Greenhill , Fred B. Holt , Nicholas Wormald

We consider a random process on recursive trees, with three types of events. Vertices give birth at a constant rate (growth), each edge may be removed independently (fragmentation of the tree) and clusters (or trees) are frozen with a rate…

Probability · Mathematics 2022-09-07 Vincent Bansaye , Chenlin Gu , Linglong Yuan

Investigating the emergence of a particular cell type is a recurring theme in models of growing cellular populations. The evolution of resistance to therapy is a classic example. Common questions are: when does the cell type first occur,…

Populations and Evolution · Quantitative Biology 2019-06-19 Michael D. Nicholson , Tibor Antal

Let {S_n, n=0,1,2,...} be a random walk generated by a sequence of i.i.d. random variables X_1, X_2,... and let tau be the first descending ladder epoch. Assuming that the distribution of X_1 belongs to the domain of attraction of an…

Probability · Mathematics 2007-05-23 Vladimir Vatutin , Vitali Wachtel

We study an unbiased, discrete time random walk on the nonnegative integers, with the origin absorbing. The process has a history-dependent step length: the walker takes steps of length v while in a region which has been visited before, and…

Statistical Mechanics · Physics 2012-08-27 Ronald Dickman , Francisco Fontenele Araujo, , Daniel ben-Avraham

We analyze evolutionary dynamics on graphs, where the nodes represent individuals of a population. The links of a node describe which other individuals can be displaced by the offspring of the individual on that node. Amplifiers of…

Populations and Evolution · Quantitative Biology 2016-10-27 Laura Hindersin , Arne Traulsen

We show that for every $k$, the probability that a randomly selected vertex of a random binary search tree on $n$ nodes is at distance $k-1$ from the closest leaf converges to a rational constant $c_k$ as $n$ goes to infinity.

Combinatorics · Mathematics 2013-04-24 Miklos Bona

A Bernoulli random walk is a random trajectory starting from 0 and having i.i.d. increments, each of them being $+1$ or -1, equally likely. The other families cited in the title are Bernoulli random walks under various conditionings. A peak…

Probability · Mathematics 2007-05-23 Jean-Maxime Labarbe , Jean-François Marckert