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To learn about the past from a sample of genomic sequences, one needs to understand how evolutionary processes shape genetic diversity. Most population genetic inference is based on frameworks assuming adaptive evolution is rare. But if…

Populations and Evolution · Quantitative Biology 2014-03-25 Richard A. Neher

This paper investigates the long-term dynamics of a reaction-diffusion predator-prey system subject to random environmental fluctuations modeled by Markovian switching. The model is formulated as a hybrid system of partial differential…

Analysis of PDEs · Mathematics 2025-07-10 Nguyen H. Du , Nhu N. Nguyen

A reaction-diffusion-advection predator-prey model with Holling type-II predator functional response is considered. We show the stability/instability of the positive steady state and the existence of a Hopf bifurcation when the diffusion…

Dynamical Systems · Mathematics 2022-12-09 Yihuan Sun , Shanshan Chen

In this study, we investigate the prey predator dynamics of the elk wolf system in northern Yellowstone National Park, USA, using a data driven modeling approach. We used yearly population data for elk and wolves from 1995 to 2022 to…

Dynamical Systems · Mathematics 2025-11-12 Anurag Singh , Nitu Kumari , Arun Kumar

We are concerned with the persistence of both predator and prey in a diffusive predator-prey system with a climate change effect, which is modeled by a spatial-temporal heterogeneity depending on a moving variable. Moreover, we consider…

Analysis of PDEs · Mathematics 2021-05-10 Wonhyung Choi , Thomas Giletti , Jong-Shenq Guo

The objective of this paper is to study the dynamical behaviour systematically of an ecological system with Beddington-DeAngelis functional response which avoids the criticism occurred in the case of ratio-dependent functional response at…

Dynamical Systems · Mathematics 2015-01-21 Sahabuddin Sarwardi , Md. Reduanur Mandal , Nurul Huda Gazi

This paper concerns pattern formation in a class of reaction-advection-diffusion systems modeling the population dynamics of two predators and one prey. We consider the biological situation that both predators forage along the population…

Analysis of PDEs · Mathematics 2016-10-26 Ke Wang , Qi Wang , Feng Yu

Molecular phenotypes are important links between genomic information and organismic functions, fitness, and evolution. Complex phenotypes, which are also called quantitative traits, often depend on multiple genomic loci. Their evolution…

Populations and Evolution · Quantitative Biology 2015-06-12 Armita Nourmohammad , Stephan Schiffels , Michael Laessig

Recent developments of eco-evolutionary models have shown that evolving feedbacks between behavioral strategies and the environment of game interactions, leading to changes in the underlying payoff matrix, can impact the underlying…

Physics and Society · Physics 2024-06-10 Katherine Betz , Feng Fu , Naoki Masuda

Evolutionary games on graphs describe how strategic interactions and population structure determine evolutionary success, quantified by the probability that a single mutant takes over a population. Graph structures, compared to the…

Populations and Evolution · Quantitative Biology 2017-05-08 Philipp M. Altrock , Arne Traulsen , Martin A. Nowak

With the development of network science, Turing pattern has been proven to be formed in discrete media such as complex networks, opening up the possibility of exploring it as a generation mechanism in the context of biology, chemistry, and…

Populations and Evolution · Quantitative Biology 2023-10-05 Yong Ye , Jiaying Zhou

Fluctuating environments are situations where the spatio-temporal stochasticity plays a significant role in the evolutionary dynamics. The study of the evolution of cooperation in these environments typically assumes a homogeneous, well…

Populations and Evolution · Quantitative Biology 2024-11-01 Viktor Stojkoski , Marko Karbevski , Zoran Utkovski , Lasko Basnarkov , Ljupco Kocarev

Phenotypic plasticity and its evolution may help evolutionary rescue in a novel and stressful environment, especially if environmental novelty reveals cryptic genetic variation that enables the evolution of increased plasticity. However,…

Populations and Evolution · Quantitative Biology 2016-09-23 Jaime Ashander , Luis-Miguel Chevin , Marissa L. Baskett

Ecosystems are formed by networks of species and their interactions. Traditional models of such interactions assume a constant interaction strength between a given pair of species. However, there is often significant trait variation among…

Populations and Evolution · Quantitative Biology 2022-05-03 Zachary Jackson , BingKan Xue

Allee effect in population dynamics has a major impact in suppressing the paradox of enrichment through global bifurcation, and it can generate highly complex dynamics. The influence of the reproductive Allee effect, incorporated in the…

Dynamical Systems · Mathematics 2023-07-17 Subrata Dey , S Ghorai , Malay Banerjee

The spatial dispersal of individuals is known to play an important role in the dynamics of populations, and is central to metapopulation theory. At the same time, local adaptation to environmental conditions creates a geographic mosaic of…

Populations and Evolution · Quantitative Biology 2017-09-25 Justin D. Yeakel , Jean P. Gibert , Peter A. H. Westley , Jonathan W. Moore

We propose a novel predator-prey model that integrate two ecologically significant mechanisms: the Allee effect in the prey population and cooperative hunting behavior among predators. Building upon the Rosenzweig-MacArthur framework, our…

Dynamical Systems · Mathematics 2026-01-19 Yujie Gao , Ton Viet Ta

Species diversity in ecosystems is often accompanied by the self-organisation of the population into fascinating spatio-temporal patterns. Here, we consider a two-dimensional three-species population model and study the spiralling patterns…

Populations and Evolution · Quantitative Biology 2013-05-09 Bartosz Szczesny , Mauro Mobilia , Alastair M. Rucklidge

With a view to connecting random mutation on the molecular level to punctuated equilibrium behavior on the phenotype level, we propose a new model for biological evolution, which incorporates random mutation and natural selection. In this…

Condensed Matter · Physics 2009-10-28 M. Y. Choi , H. Y. Lee , D. Kim , S. H. Park

The entanglement of population dynamics, evolution, and adaptive radiation for species competing for resources is studied. For resource harvesting, we modify the model used in Ref. Phys. Rev. Lett. 118 048103 and introduce new resource…

Populations and Evolution · Quantitative Biology 2023-10-03 Sergei V. Koniakhin