Related papers: Local description of phylogenetic group-based mode…

We show that every affine or projective algebraic variety defined over the field of real or complex numbers is homeomorphic to a variety defined over the field of algebraic numbers. We construct such a homeomorphism by choosing a small…

We study phylogenetic invariants of models of evolution whose group of symmetries is the cyclic group with 3 elements. We prove that projective schemes corresponding to the ideal I of phylogenetic invariants of such a model and to its…

Let $U$ be a smooth affine curve over a number field $K$ with a compactification $X$ and let $\mathbb L$ be a rank $2$, geometrically irreducible $\bar{\mathbb Q}_\ell$-local system on $U$ with cyclotomic determinant that extends to an…

We prove that for any affine variety S defined over Q there exist Shephard and Artin groups G such that a Zariski open subset U of S is biregular isomorphic to a Zariski open subset of the character variety Hom(G, PO(3))//PO(3). The subset…

We show that every finite abelian group $G$ occurs as the group of rational points of an ordinary abelian variety over $\mathbb{F}_2$, $\mathbb{F}_3$ and $\mathbb{F}_5$. We produce partial results for abelian varieties over a general finite…

Let $X/\mathbb{F}_{q}$ be a smooth geometrically connected variety. Inspired by work of Corlette-Simpson over $\mathbb{C}$, we formulate a conjecture that absolutely irreducible rank 2 local systems with infinite monodromy on $X$ come from…

We consider three isogeny invariants of abelian varieties over finite fields: the Galois group, Newton polygon, and the angle rank. Motivated by work of Dupuy, Kedlaya, and Zureick-Brown, we define a new invariant called the weighted…

We propose a simple criterion to know if an abelian variety $A$ defined over a finite field $\mathbb{F}_q$ is cyclic, i.e., it has a cyclic group of rational points; this criterion is based on the endomorphism ring End$_{\mathbb{F}_q}(A)$.…

In this note we show that any basic abelian variety with additional structures over an arbitrary algebraically closed field of characteristic $p>0$ is isogenous to another one defined over a finite field. We also show that the category of…

Phylogenetic networks describe the evolution of a set of taxa for which reticulate events have occurred at some point in their evolutionary history. Of particular interest is when the evolutionary history between a set of just three taxa…

We propose a model-theoretic structure for Shimura varieties and give necessary and sufficient conditions to obtain categoricity. We show that these conditions are directly related to important conjectures in number theory coming from…

Let $X/\mathbb{F}_{q}$ be a smooth, geometrically connected, quasiprojective variety. Let $\mathcal{E}$ be a semisimple overconvergent $F$-isocrystal on $X$. Suppose that irreducible summands $\mathcal{E}_i$ of $\mathcal E$ have rank 2,…

We describe a deterministic process to associate a practical, permanent label to isomorphism classes of abelian varieties defined over finite fields with commutative endomorphism algebra as long as they are ordinary or defined over a prime…

We seek to determine a real algebraic variety from a fixed finite subset of points. Existing methods are studied and new methods are developed. Our focus lies on aspects of topology and algebraic geometry, such as dimension and defining…

We give an explicit conjectural formula for the motivic Euler characteristic of an arbitrary symplectic local system on the moduli space A_3 of principally polarized abelian threefolds. The main term of the formula is a conjectural motive…

We prove that the phylogenetic complexity -- an invariant introduced by Sturmfels and Sullivant -- of any finite abelian group is finite.

The regular \Z^r-covers of a finite cell complex X are parameterized by the Grassmannian of r-planes in H^1(X,\Q). Moving about this variety, and recording when the Betti numbers b_1,..., b_i of the corresponding covers are finite carves…

For an odd prime p, we construct integral models over p for Shimura varieties with parahoric level structure, attached to Shimura data (G,X) of abelian type, such that G splits over a tamely ramified extension of Q_p. The local structure of…

Let $U/K$ be a smooth affine curve over a number field and let $L$ be an irreducible rank 3 $\overline{\mathbb Q}_{\ell}$-local system on $U$ with trivial determinant and infinite geometric monodromy around a cusp. Suppose further that $L$…

Let $A$ be an abelian surface over a finite field $k$. The $k$-isogeny class of $A$ is uniquely determined by a Weil polynomial $f_A$ of degree 4. We give a classification of the groups of $k$-rational points on varieties from this class in…