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We propose that protein loops can be interpreted as topological domain-wall solitons. They interpolate between ground states that are the secondary structures like alpha-helices and beta-strands. Entire proteins can then be folded simply by…

Biological Physics · Physics 2014-11-20 M. N. Chernodub , Shuangwei Hu , Antti J. Niemi

We prove that the highest density of non-overlapping translates of a given centrally symmetric convex domain relative to its outer parallel domain of given outer radius is attained by a lattice packing in the Euclidean plane. This…

Metric Geometry · Mathematics 2025-12-30 Károly Bezdek , Zsolt Lángi

In this paper we prove a theorem that provides an upper bound for the density of packings of congruent copies of a given convex body in $\mathbb{R}^n$; this theorem is a generalization of the linear programming bound for sphere packings. We…

Metric Geometry · Mathematics 2019-11-07 Fernando Mário de Oliveira Filho , Frank Vallentin

We present a high-accuracy procedure for electronic structure calculations of strongly correlated materials. To address limitations in current electronic structure methods, we employ density functional theory in combination with the…

We essentially complete a program initiated by Boyarchenko--Weinstein to give a full description of the cohomology of deep level Deligne--Lusztig varieties for elliptic tori, with coefficients in arbitrary non-defining characteristics. We…

Algebraic Geometry · Mathematics 2025-07-10 Alexander B. Ivanov , Sian Nie

We study the problem of high-dimensional multiple packing in Euclidean space. Multiple packing is a natural generalization of sphere packing and is defined as follows. Let $ N>0 $ and $ L\in\mathbb{Z}_{\ge2} $. A multiple packing is a set…

Metric Geometry · Mathematics 2022-11-10 Yihan Zhang , Shashank Vatedka

Fundamental theories and models of many-body physics can be probed in experiments on ultracold atoms held in place by electromagnetic fields. In particular, of considerable interest are systems under curved confinement, since they can yield…

Quantum Gases · Physics 2026-03-06 Fabio Cinti , Matteo Ciardi , Santi Prestipino , Giuseppe Pellicane

We analyze the general problem of determining optimally dense packings, in a Euclidean or hyperbolic space, of congruent copies of some fixed finite set of bodies. We are strongly guided by examples of aperiodic tilings in Euclidean space…

Metric Geometry · Mathematics 2018-07-11 Lewis Bowen , Charles Holton , Charles Radin , Lorenzo Sadun

We study contact structures compatible with genus one open book decompositions with one boundary component. Any monodromy for such an open book can be written as a product of Dehn twists around dual non-separating curves in the…

Symplectic Geometry · Mathematics 2014-10-01 John A. Baldwin

We prove detailed asymptotics for the number of spanning trees, called complexity, for a general class of discrete tori as the parameters tend to infinity. The proof uses in particular certain ideas and techniques from an earlier paper. Our…

Mathematical Physics · Physics 2011-11-01 Gautam Chinta , Jay Jorgenson , Anders Karlsson

Packings of hard polyhedra have been studied for centuries due to their mathematical aesthetic and more recently for their applications in fields such as nanoscience, granular and colloidal matter, and biology. In all these fields, particle…

Soft Condensed Matter · Physics 2014-03-10 Elizabeth R. Chen , Daphne Klotsa , Michael Engel , Pablo F. Damasceno , Sharon C. Glotzer

In this paper we study congruent and non-congruent hyperball (hypersphere) packings of the truncated regular octahedron and cube tilings. These are derived from the Coxeter simplex tilings $\{p,3,4\}$ $(7\le p \in \mathbb{N})$ and…

Metric Geometry · Mathematics 2018-03-14 Jenő Szirmai

Topological metal/semimetals (TMs) have emerged as a new frontier in the field of quantum materials. A few two-dimensional (2D) boron sheets have been suggested as Dirac materials, however, to date TMs made of three-dimensional (3D) boron…

Materials Science · Physics 2018-10-17 Yan Gao , Yuee Xie , Yuanping Chen , Jinxing Gu , Zhongfang Chen

We present a braided circuit topology framework for investigating topology and structural phase transitions in aggregates of semiflexible polymers. In the conventional approach to circuit topology, which specifically applies to single…

Soft Condensed Matter · Physics 2024-02-27 Jonas Berx , Alireza Mashaghi

We report numerical results of effective attractive forces on the packing properties of two-dimensional elongated grains. In deposits of non-cohesive rods in 2D, the topology of the packing is mainly dominated by the formation of ordered…

Soft Condensed Matter · Physics 2011-07-18 R. C. Hidalgo , D. Kadau , T. Kanzaki , H. J. Herrmann

This article provides a complete characterization of the conformal classes of product tori and standard flat tori in complex dimension 1 (real dimension 2). Utilizing basic differential geometry methods, our approach contrasts with…

Differential Geometry · Mathematics 2025-04-08 Leonardo A. Cano García

Let $S$ be a closed surface of genus $g\geq 1$, furnished with an area form $\omega$. We show that there exists an open and dense set ${\mathcal O_r}$ of the space of Hamiltonian diffeomorphisms of class $C^r$, $1\leq r\leq\infty$, endowed…

Dynamical Systems · Mathematics 2023-06-07 Patrice Le Calvez , Martin Sambarino

Packing of spheres is a problem with a long history dating back to Kepler's conjecture in 1611. The highest density is realized in face-centred-cubic (FCC) and hexagonal-close-packed (HCP) arrangements. These are only limiting examples of…

Statistical Mechanics · Physics 2023-10-17 R. Ganesh , Amna Khairi Nasr

Understanding the physical properties of star-forming cores as mass reservoirs for protostars, and the impact of turbulence, is crucial in star formation studies. We implemented passive tracer particles in clump-scale numerical simulations…

Astrophysics of Galaxies · Physics 2025-01-08 Shingo Nozaki , Hajime Fukushima , Kazuki Tokuda , Masahiro N. Machida

We consider collective dynamics of self-propelling particles in two dimensions. They can align themselves according to the direction of propulsion of their neighbours, together with a random perturbation (i.e. rotational fluctuation). They…

Soft Condensed Matter · Physics 2019-04-01 Shubhashis Rana , Md. Samsuzzaman , Arnab Saha