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Tree-child networks are an important class of phylogenetic network used to model reticulate evolutionary processes. These networks have attracted increasing attention from researchers with interests in both combinatorics and algorithms. A…

Combinatorics · Mathematics 2026-05-11 Hexuan Liu , Michael Wallner , Guan-Ru Yu

The motivation of this paper is to construct a deformation theory of coderivations of coassociative coalgebras. We introduce a notion of a Coder pair, that is, a coassociative coalgebra with a coderivation. Then we define a proper…

Rings and Algebras · Mathematics 2023-01-31 Lei Du , Yashuang Ma , Jiangnan Xv , Yanhong Bao

Toric codes are obtained by evaluating rational functions of a nonsingular toric variety at the algebraic torus. One can extend toric codes to the so called generalized toric codes. This extension consists on evaluating elements of an…

Information Theory · Computer Science 2010-02-25 Diego Ruano

A phylogenetic tree shows the evolutionary relationships among species. Internal nodes of the tree represent speciation events and leaf nodes correspond to species. A goal of phylogenetics is to combine such trees into larger trees, called…

Artificial Intelligence · Computer Science 2014-01-16 Neil C. A. Moore , Patrick Prosser

Decompositions of networks are useful not only for structural exploration. They also have implications and use in analysis and computational solution of processes (such as the Ising model, percolation, SIR model) running on a given network.…

Disordered Systems and Neural Networks · Physics 2020-04-29 Konstantin Klemm

Tangle structure trees, introduced in [3], offer a unified data structure that displays all the tangles of a graph or data set together with certificates for the non-existence of any other tangles, either locally or overall. In this paper…

Combinatorics · Mathematics 2026-03-19 Hanno von Bergen , Reinhard Diestel

We use a tensor unfolding technique to prove a new identifiability result for discrete bipartite graphical models, which have a bipartite graph between an observed and a latent layer. This model family includes popular models such as…

Statistics Theory · Mathematics 2025-01-22 Yuqi Gu

We consider a variant of treewidth that we call clique-partitioned treewidth in which each bag is partitioned into cliques. This is motivated by the recent development of FPT-algorithms based on similar parameters for various problems. With…

Data Structures and Algorithms · Computer Science 2023-02-20 Thomas Bläsius , Maximilian Katzmann , Marcus Wilhelm

Models of complex systems are widely used in the physical and social sciences, and the concept of layering, typically building upon graph-theoretic structure, is a common feature. We describe an intuitionistic substructural logic called…

Logic in Computer Science · Computer Science 2023-06-22 Simon Docherty , David Pym

This is a new and short proof of the main theorem of classical structure tree theory. Namely, we show the existence of certain automorphism-invariant tree-decompositions of graphs based on the principle of removing finitely many edges. This…

Group Theory · Mathematics 2010-03-05 Bernhard Krön

Despite deep learning models running well-defined mathematical functions, we lack a formal mathematical framework for describing model architectures. Ad-hoc notation, diagrams, and pseudocode poorly handle nonlinear broadcasting and the…

Machine Learning · Computer Science 2026-04-21 Vincent Abbott , Gioele Zardini

This work is the first in a series of papers that, among other things, extends the formalism of diolic differential calculus, wherein a new context for obtaining differential calculus in vector bundles was established. Here we provide a…

Differential Geometry · Mathematics 2023-04-03 Jacob Kryczka

Let G be a finite strongly connected aperiodic directed graph in which each edge carries a label from a finite alphabet A. Then G induces a trellis coded quantizer for encoding an alphabet A memoryless source. A source sequence of long…

Information Theory · Computer Science 2010-10-08 John Kieffer , Yu Liao

Automated theorem proving in first-order logic is an active research area which is successfully supported by machine learning. While there have been various proposals for encoding logical formulas into numerical vectors -- from simple…

Artificial Intelligence · Computer Science 2020-03-17 Ibrahim Abdelaziz , Veronika Thost , Maxwell Crouse , Achille Fokoue

A parametric approach is developed to the method of S-tree diagrams and its generalization for investigation of the hierarchical substructure of $N$-body nonlinearly interacting systems (e.g., clusters of galaxies). The introduction of a…

Astrophysics · Physics 2007-05-23 Karen M. Bekarian , Anahit A. Melkonian

This paper presents the first in a series of results that allow us to develop a theory providing finer control over the complexity of normalisation, and in particular of cut elimination. By considering atoms as self-dual non-commutative…

Logic in Computer Science · Computer Science 2022-07-01 Andrea Aler Tubella , Alessio Guglielmi

Two fundamental algorithm-design paradigms are Tree Search and Dynamic Programming. The techniques used therein have been shown to complement one another when solving the complete set partitioning problem, also known as the coalition…

Multiagent Systems · Computer Science 2018-08-24 Talal Rahwan , Tomasz P. Michalak

We propose two approximate algorithms for MAP decoding on tail-biting trellises. The algorithms work on a subset of nodes of the tail-biting trellis, judiciously selected. We report the results of simulations on an AWGN channel using the…

Information Theory · Computer Science 2007-07-13 A. S. Madhu , Priti Shankar

The minimum distance is one of the most important combinatorial characterizations of a code. The maximum likelihood decoding problem is one of the most important algorithmic problems of a code. While these problems are known to be hard for…

Information Theory · Computer Science 2016-08-31 Qi Cheng

A visualized graph is a powerful tool for data analysis and synthesis tasks. In this case, the task of visualization constitutes not only in displaying vertices and edges according to the graph representation, but also in ensuring that the…

Combinatorics · Mathematics 2024-08-01 Sergey Kurapov , Maxim Davidovsky