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We show that, in certain circumstances, exact excitation energies appear as locally site-independent (or flat) modes if one records the excitation spectrum of the effective Hamiltonian while sweeping through the lattice in the variational…

Strongly Correlated Electrons · Physics 2017-08-24 Natalia Chepiga , Frédéric Mila

In agricultural landscapes, the composition and spatial configuration of cultivated and semi-natural elements strongly impact species dynamics, their interactions and habitat connectivity. To allow for landscape structural analysis and…

Populations and Evolution · Quantitative Biology 2020-03-05 Patrizia Zamberletti , Julien Papaïx , Edith Gabriel , Thomas Opitz

In networked systems, stochastic resonance occurs as a collective phenomenon where the entire stochastic network resonates with a weak applied periodic signal. Beyond the interplay among the network coupling, the amplitude of the external…

Adaptation and Self-Organizing Systems · Physics 2025-02-11 Jonah E. Friederich , Everton S. Medeiros , Sabine H. L. Klapp , Anna Zakharova

Cells use genetic switches to shift between alternate stable gene expression states, e.g., to adapt to new environments or to follow a developmental pathway. Conceptually, these stable phenotypes can be considered as attractive states on an…

Molecular Networks · Quantitative Biology 2021-06-18 Michael Assaf , Shay Be'er , Elijah Roberts

We show that the empirical process associated with a system of weakly interacting diffusion processes exhibits a form of noise-induced metastability. The result is based on an analysis of the associated McKean--Vlasov free energy, which,…

Analysis of PDEs · Mathematics 2021-03-04 Rishabh S. Gvalani , André Schlichting

Latent variable models are an elegant framework for capturing rich probabilistic dependencies in many applications. However, current approaches typically parametrize these models using conditional probability tables, and learning relies…

Machine Learning · Computer Science 2012-10-19 Ankur P. Parikh , Le Song , Mariya Ishteva , Gabi Teodoru , Eric P. Xing

Vector autoregression has been widely used for modeling and analysis of multivariate time series data. In high-dimensional settings, model parameter regularization schemes inducing sparsity yield interpretable models and achieved good…

Methodology · Statistics 2023-06-08 Leo L. Duan , Zeyu Yuwen , George Michailidis , Zhengwu Zhang

Networks serve as a tool used to examine the large-scale connectivity patterns in complex systems. Modelling their generative mechanism nonparametrically is often based on step-functions, such as the stochastic block models. These models…

Methodology · Statistics 2024-01-11 Arthur Verdeyme , Sofia C. Olhede

We consider a family of random matrix ensembles (RME) invariant under similarity transformations and described by the probability density $P({\bf H})= \exp[-{\rm Tr}V({\bf H})]$. Dyson's mean field theory (MFT) of the corresponding plasma…

Condensed Matter · Physics 2009-10-28 C. M. Canali

Given a connected, undirected graph whose edges are labelled (or coloured), the minimum labelling spanning tree (MLST) problem seeks a spanning tree whose edges have the smallest number of distinct labels (or colours). In recent work, the…

Optimization and Control · Mathematics 2014-03-05 Sergio Consoli , Nenad Mladenovic , Jose Andres Moreno-Perez

We show that the interplay between excluded volume effects, hydrophobicity, and hydrogen bonding of a tube-like representation of a polypeptide chain gives rise to free energy landscapes that exhibit a small number of metastable minima…

The analysis of stochastic loss networks has long been of interest in computer and communications networks and is becoming important in the areas of service and information systems. In traditional settings, computing the well known Erlang…

Probability · Mathematics 2007-08-31 Yingdong Lu , Ana Radovanović

Gene expression is significantly stochastic making modeling of genetic networks challenging. We present an approximation that allows the calculation of not only the mean and variance but also the distribution of protein numbers. We assume…

Molecular Networks · Quantitative Biology 2008-12-18 Vahid Shahrezaei , Peter S. Swain

For sequences of random backward nested subspaces as occur, say, in dimension reduction for manifold or stratified space valued data, asymptotic results are derived. In fact, we formulate our results more generally for backward nested…

Statistics Theory · Mathematics 2016-09-06 Stephan F. Huckemann , Benjamin Eltzner

The eigenvalue spectrum of the transition matrix of a network encodes important information about its structural and dynamical properties. We study the transition matrix of a family of fractal scale-free networks and analytically determine…

Statistical Mechanics · Physics 2012-07-16 Zhongzhi Zhang , Zhengyi Hu , Yibin Sheng , Guanrong Chen

The most common strategy for enabling a process in a distributed system to broadcast a message is one-to-all communication. However, this approach is not scalable, as it places a heavy load on the sender. This work presents an autonomic…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-12-03 Luiz A. Rodrigues , Elias P. Duarte , Luciana Arantes

By means of molecular dynamics simulations, we study the stationary points of the potential energy in a Lennard-Jones liquid, giving a purely geometric characterization of the energy landscape of the system. We find a linear relation…

Statistical Mechanics · Physics 2009-10-31 Kurt Broderix , Kamal K. Bhattacharya , Andrea Cavagna , Annette Zippelius , Irene Giardina

80% of all Renewable Energy Power in Germany is installed in tree-like distribution grids. Intermittent power fluctuations from such sources introduce new dynamics into the lower grid layers. At the same time, distributed resources will…

Physics and Society · Physics 2017-10-11 Sabine Auer , Frank Hellmann , Marie Krause , Jürgen Kurths

In graph signal processing, the graph adjacency matrix or the graph Laplacian commonly define the shift operator. The spectral decomposition of the shift operator plays an important role in that the eigenvalues represent frequencies and the…

Numerical Analysis · Computer Science 2016-11-09 Stephen Kruzick , Jose M. F. Moura

In this paper, a multi-scale approach to spectrum sensing in cognitive cellular networks is proposed. In order to overcome the huge cost incurred in the acquisition of full network state information, a hierarchical scheme is proposed, based…

Information Theory · Computer Science 2017-02-28 Nicolo Michelusi , Matthew Nokleby , Urbashi Mitra , Robert Calderbank