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A method is proposed to identify target states that optimize a metastability index amongst a set of trial states and use these target states as milestones (or core sets) to build Markov State Models (MSMs). If the optimized metastability…

Statistical Mechanics · Physics 2016-08-03 Enrico Guarnera , Eric Vanden-Eijnden

Dynamical networks are powerful tools for modeling a broad range of complex systems, including financial markets, brains, and ecosystems. They encode how the basic elements (nodes) of these systems interact altogether (via links) and evolve…

Physics and Society · Physics 2019-03-13 Edward Laurence , Nicolas Doyon , Louis J Dubé , Patrick Desrosiers

The network reconfiguration problem seeks to find a rooted tree $T$ such that the energy of the (unique) feasible electrical flow over $T$ is minimized. The tree requirement on the support of the flow is motivated by operational constraints…

Data Structures and Algorithms · Computer Science 2023-08-24 Swati Gupta , Ali Khodabakhsh , Hassan Mortagy , Evdokia Nikolova

To meet the demands of densely deploying communication and sensing devices in the next generation of wireless networks, integrated sensing and communication (ISAC) technology is employed to alleviate spectrum scarcity, while stochastic…

Networking and Internet Architecture · Computer Science 2024-04-23 Ruibo Wang , Baha Eddine Youcef Belmekki , Xue Zhang , Mohamed-Slim Alouini

We propose a new perspective on the asymptotic regimes of fast and slow extinction in the contact process on locally converging sequences of sparse finite graphs. We characterise the phase boundary by the existence of a metastable density,…

Probability · Mathematics 2025-05-29 Benedikt Jahnel , Lukas Lüchtrath , Christian Mönch

We propose a generic multistage stochastic model for the Alternating Current Optimal Power Flow (AC OPF) problem for radial distribution networks, to account for the random electricity production of renewable energy sources and dynamic…

Optimization and Control · Mathematics 2021-11-19 Maxime Grangereau , Wim van Ackooij , Stéphane Gaubert

The spectral theory of graphs provides a bridge between classical signal processing and the nascent field of graph signal processing. In this paper, a spectral graph analogy to Heisenberg's celebrated uncertainty principle is developed.…

Information Theory · Computer Science 2013-08-02 Ameya Agaskar , Yue M. Lu

State-specific approximations can provide an accurate representation of challenging electronic excitations by enabling relaxation of the electron density. While state-specific wave functions are known to be local minima or saddle points of…

Chemical Physics · Physics 2022-01-06 Hugh G. A. Burton

To understand the dynamics of quantum many-body systems, it is essential to study excited eigenstates. While tensor network states have become a standard tool for computing ground states in computational many-body physics, obtaining…

Chemical Physics · Physics 2025-10-24 Madhumita Rano , Henrik R. Larsson

We study structure, eigenvalue spectra and diffusion dynamics in a wide class of networks with subgraphs (modules) at mesoscopic scale. The networks are grown within the model with three parameters controlling the number of modules, their…

Statistical Mechanics · Physics 2009-08-25 Marija Mitrović , Bosiljka Tadić

The minimum spanning tree (MST) construction is a classical problem in Distributed Computing for creating a globally minimized structure distributedly. Self-stabilization is versatile technique for forward recovery that permits to handle…

Data Structures and Algorithms · Computer Science 2016-11-25 Lélia Blin , Maria Gradinariu Potop-Butucaru , Stephane Rovedakis , Sébastien Tixeuil

The paper deals with non-linear Poisson neuron network models with bounded memory dynamics, that can include both Hebbian learning mechanisms and refractory periods. The state of a network is described by the times elapsed since its neurons…

Probability · Mathematics 2012-06-21 Konstantin Borovkov , Geoffrey Decrouez , Matthieu Gilson

Many recent generative models make use of neural networks to transform the probability distribution of a simple low-dimensional noise process into the complex distribution of the data. This raises the question of whether biological networks…

Neural and Evolutionary Computing · Computer Science 2018-02-07 Hesham Mostafa , Gert Cauwenberghs

We study the energy level spacing of perturbed conformal minimal models in finite volume, considering perturbations of such models that are massive but not necessarily integrable. We compute their spectrum using a renormalization group…

Statistical Mechanics · Physics 2015-05-18 G. P. Brandino , R. M. Konik , G. Mussardo

Stochastic Thermodynamics uses Markovian jump processes to model random transitions between observable mesoscopic states. Physical currents are obtained from anti-symmetric jump observables defined on the edges of the graph representing the…

Statistical Mechanics · Physics 2015-10-19 Artur Wachtel , Jürgen Vollmer , Bernhard Altaner

Network representations are useful for describing the structure of a large variety of complex systems. Although most studies of real-world networks suppose that nodes are connected by only a single type of edge, most natural and engineered…

Physics and Society · Physics 2020-08-05 Rubén J. Sánchez-García , Emanuele Cozzo , Yamir Moreno

A central goal of protein-folding theory is to predict the stochastic dynamics of transition paths --- the rare trajectories that transit between the folded and unfolded ensembles --- using only thermodynamic information, such as a…

Biomolecules · Quantitative Biology 2018-08-09 William M. Jacobs , Eugene I. Shakhnovich

The training of neural networks is a complex, high-dimensional, non-convex and noisy optimization problem whose theoretical understanding is interesting both from an applicative perspective and for fundamental reasons. A core challenge is…

Statistical Mechanics · Physics 2023-04-19 Theo Jules , Gal Brener , Tal Kachman , Noam Levi , Yohai Bar-Sinai

The dynamical phenomena of complex networks are very difficult to predict from local information due to the rich microstructures and corresponding complex dynamics. On the other hands, it is a horrible job to compute some stochastic…

Data Structures and Algorithms · Computer Science 2016-01-08 Bing Yao , Xia Liu , Jin Xu

How do we search for the entire family tree without unwanted random guesses, starting from a high-index and high-energy stationary state on the energy landscape? Here we introduce a general numerical method that constructs the pathway map…

Computational Physics · Physics 2021-04-21 Jianyuan Yin , Yiwei Wang , Jeff Z. Y. Chen , Pingwen Zhang , Lei Zhang
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