Related papers: On the factorization of composite polymer knots in…
In order to model entanglements of polymers in a confined region, we consider the linking numbers and writhes of cycles in random linear embeddings of complete graphs in a cube. Our main results are that for a random linear embedding of…
A ring polymer in a confining space may exhibit at least two phases, namely an expanded (or solvent-rich phase) if its concentration is small, or a collapsed (or polymer-rich phase) when it is concentrated and compressed. These phases are…
We investigate by means of a number of different dynamical Monte Carlo simulation methods the self-assembly of equilibrium polymers in dilute, semidilute and concentrated solutions under good-solvent conditions. In our simulations, both…
We model the typical behavior of knots and links using grid diagrams. Links are ubiquitous in the sciences, and their "normal" or "typical" behavior is of significant importance in understanding situations such as the topological state of…
Current theories on the conformation and dynamics of unknotted and non-concatenated ring polymers in melt conditions describe each ring as a tree-like double-folded object. While evidence from simulations supports this picture on a single…
We have examined the behaviors of a knotted linear polymer in narrow tubes using Langevin dynamics simulation to investigate the knot localization property in one-dimensional (1D) geometry. We have found that the knot is strongly localized…
We partially determine grid homology (combinatorial knot Floer homology) of diagonal knots, which are conjectured to be equivalent to positive braid knots, by exploiting nice grid diagrams. Its next-to-top term detects the number of prime…
We consider random graphs sampled uniformly from a structured class of graphs, such as the class of graphs embeddable in a given surface. We sharpen and extend earlier results on pendant appearances, concerning for example numbers of…
Twist stiffness and an asymmetric bending stiffness of a polymer or a polymer bundle is captured by the elastic ribbon model. We investigate the effects a ring geometry induces to a thermally fluctuating ribbon, finding bend-bend coupling…
An efficient integer factorization algorithm would reduce the security of all variants of the RSA cryptographic scheme to zero. Despite the passage of years, no method for efficiently factoring large semiprime numbers in a classical…
In previous papers, the author realized the following principle for many knot theories: if a knot diagram is complicated enough then it reproduces itself, i.e., is a subdiagram of any other diagram equivalent to it. This principle is…
The topological string interpretation of homological knot invariants has led to several insights into the structure of the theory in the case of sl(N). We study possible extensions of the matrix factorization approach to knot homology for…
The interplay of topological constraints and persistence length of ring polymers in their own melt is investigated by means of dynamical Monte Carlo simulations of a three dimensional lattice model. We ask if the results are consistent with…
Besides mathematical interest, knots and knot theory have important applications in physics, chemistry, and biology. Stasiak and colleagues devised a constructive method for a knot "energy" using a Metropolis Monte Carlo algorithm to…
The Jacobi system on a full-line lattice is considered when it contains additional weight factors. A factorization formula is derived expressing the scattering from such a generalized Jacobi system in terms of the scattering from its…
In continuation to our recent work on noncommutative polynomial factorization, we consider the factorization problem for matrices of polynomials and show the following results. (1) Given as input a full rank $d\times d$ matrix $M$ whose…
The freely rotating chain is one of the classic discrete models of a polymer in dilute solution. It consists of a broken line of N straight segments of fixed length such that the angle between adjacent segments is constant and the N-1…
We construct a graph G such that any embedding of G into R^{3} contains a nonsplit link of two components, where at least one of the components is a nontrivial knot. Further, for any m < n we produce a graph H so that every embedding of H…
Since its introduction in 2012, the factorization theory for rational motions quickly evolved and found applications in theoretical and applied mechanism science. We provide an accessible introduction to motion factorization with many…
We show that any closed incompressible surface in the complement of a positive knot is algebraically non-split from the knot, positive knots cannot bound non-free incompressible Seifert surfaces and that the splitability and the primeness…