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The sustainable use of multicomponent treatments such as combination therapies, combination vaccines/chemicals, and plants carrying multigenic resistance requires an understanding of how their population-wide deployment affects the speed of…

Populations and Evolution · Quantitative Biology 2015-06-16 Romain Bourget , Loïc Chaumont , Natalia Sapoukhina

Pathogen control is a critical aspect of modern poultry farming, providing important benefits for both public health and productivity. Effective poultry management measures to reduce pathogen levels in poultry flocks promote food safety by…

Machine Learning · Computer Science 2024-03-04 Ganga Gireesan , Nisha Pillai , Michael J Rothrock , Bindu Nanduri , Zhiqian Chen , Mahalingam Ramkumar

Pathogen introduction in plant communities can cause serious impact and biodiversity losses that may take long time to manage and restore. Effective control of epidemic spreading in the wild is a problem of paramount importance, because of…

Populations and Evolution · Quantitative Biology 2022-06-15 Ignacio Taguas , José A. Capitán , Juan C. Nuño

Vector-borne diseases often infect multiple host species, increasing the likelihood of disease persistence due to the presence of multiple reservoirs. Vector biting patterns and feeding preferences can shift in response to selective…

Populations and Evolution · Quantitative Biology 2026-05-01 Shravani Shetgaonkar , Anupama Sharma

Mathematical models of infectious disease transmission typically neglect within-host dynamics. Yet within-host dynamics - including pathogen replication, host immune responses, and interactions with microbiota - are crucial not only for…

Populations and Evolution · Quantitative Biology 2023-12-20 Cameron A. Smith , Ben Ashby

Quantitative plant disease resistance is believed to be more durable than qualitative resistance, since it exerts less selective pressure on the pathogens. However, the process of progressive pathogen adaptation to quantitative resistance…

Populations and Evolution · Quantitative Biology 2014-10-24 Romain Bourget , Loïc Chaumont , Charles-Eric Durel , Natalia Sapoukhina

In this paper we propose a method to study a general vector-hosts mathematical model in order to explain how the changes in biodiversity could influence the dynamics of vector-borne diseases. We find that under the assumption of…

Populations and Evolution · Quantitative Biology 2018-11-28 Camilo Sanabria Malagon , Esteban Vargas Bernal

Disease and pest control largely rely on pesticides use and progress still remains to be made towards more sustainable practices. Pest Monitoring Networks (PMNs) can provide useful information for improving crop protection by restricting…

Populations and Evolution · Quantitative Biology 2020-02-05 Marie-Josée Cros , Jean-Noël Aubertot , Sabrina Gaba , Xavier Reboud , Régis Sabbadin , Nathalie Peyrard

In this work we have investigated the evolutionary dynamics of a generalist pathogen, e.g. a virus population, that evolves towards specialisation in an environment with multiple host types. We have particularly explored under which…

Dynamical Systems · Mathematics 2020-06-24 Anel Nurtay , Matthew G. Hennessy , Lluís Alsedà , Santiago F. Elena , Josep Sardanyés

We use a multitype continuous time Markov branching process model to describe the dynamics of the spread of parasites of two types that can mutate into each other in a common host population. Instead of using a single virulence…

Probability · Mathematics 2011-09-02 Konstantin Borovkov , Robert Day , Timothy Rice

Human pathogens transmitted through environmental pathways are subject to stress and pressures outside of the host. These pressures may cause pathogen pathovars to diverge in their environmental persistence and their infectivity on an…

Populations and Evolution · Quantitative Biology 2018-02-16 Andrew F. Brouwer , Marisa C. Eisenberg , Nancy G. Love , Joseph N. S. Eisenberg

Mathematical disease modelling has long operated under the assumption that any one infectious disease is caused by one transmissible pathogen spreading among a population. This paradigm has been useful in simplifying the biological reality…

Populations and Evolution · Quantitative Biology 2021-06-02 Blake J. M. Williams , Guillaume St-Onge , Laurent Hébert-Dufresne

The emergence or adaptation of pathogens may lead to epidemics, highlighting the need for a thorough understanding of pathogen evolution. The tradeoff hypothesis suggests that virulence evolves to reach an optimal transmission intensity…

Populations and Evolution · Quantitative Biology 2024-12-09 Daniel A. M. Villela

Interactions among multiple infectious agents are increasingly recognized as a fundamental issue in the understanding of key questions in public health, regarding pathogen emergence, maintenance, and evolution. The full description of…

Populations and Evolution · Quantitative Biology 2013-08-21 Chiara Poletto , Sandro Meloni , Vittoria Colizza , Yamir Moreno , Alessandro Vespignani

A crop can be represented as a biotechnical system in which components are either chosen (cultivar, management) or given (soil, climate) and whose combination generates highly variable stress patterns and yield responses. Here, we used…

Populations and Evolution · Quantitative Biology 2014-03-13 Pierre Casadebaig , Ronan Trépos , Victor Picheny , Nicolas B. Langlade , Patrick Vincourt , Philippe Debaeke

Understanding how a diversity of plants in agroecosystems affects the adaptation of pathogens in a key issue in agroecology. We analyze PDE systems describing the dynamics of adaptation of two phenotypically structured populations, under…

Analysis of PDEs · Mathematics 2021-03-08 François Hamel , Florian Lavigne , Lionel Roques

Growing mixtures of annual arable crop species or genotypes is a promising way to improve crop production without increasing agricultural inputs. To design optimal crop mixtures, choices of species, genotypes, sowing proportion, plant…

Recently, the RIDL-SIT technology has been field-tested for control of Aedes aegypti. The technique consists of releasing genetically modified mosquitoes carrying a "lethal gene". In 2016 the World Health Organisation (WHO) and the…

Populations and Evolution · Quantitative Biology 2020-06-02 Mario A. Natiello , Hernán G. Solari

Microbiome-based stratification of healthy individuals into compositional categories, referred to as "community types", holds promise for drastically improving personalized medicine. Despite this potential, the existence of community types…

Quantitative Methods · Quantitative Biology 2016-04-27 Travis E. Gibson , Amir Bashan , Hong-Tai Cao , Scott T. Weiss , Yang-Yu Liu

Chronic viral infections can persist in an infected person for decades. From the perspective of the virus, a single infection can span thousands of generations, leading to a highly diverse population of viruses with its own complex…

Populations and Evolution · Quantitative Biology 2023-05-30 Dmitry Gromov , Ethan O. Romero-Severson
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