Related papers: Static Level Ancestors in Practice

A buffer k-d tree is a k-d tree variant for massively-parallel nearest neighbor search. While providing valuable speed-ups on modern many-core devices in case both a large number of reference and query points are given, buffer k-d trees are…

The Subtree Isomorphism problem asks whether a given tree is contained in another given tree. The problem is of fundamental importance and has been studied since the 1960s. For some variants, e.g., ordered trees, near-linear time algorithms…

A recent work shows how we can optimize a tree based mode of operation for a rate 1 hash function. In particular, an algorithm and a theorem are presented for selecting a good tree topology in order to optimize both the running time and the…

We consider the problem of designing an adaptive sequence of questions that optimally classify a candidate's ability into one of several categories or discriminative grades. A candidate's ability is modeled as an unknown parameter, which,…

The Bilevel Optimization Problem is a hierarchical optimization problem with two agents, a leader and a follower. The leader make their own decisions first, and the followers make the best choices accordingly. The leader knows the…

We consider dynamic subgraph connectivity problems for planar graphs. In this model there is a fixed underlying planar graph, where each edge and vertex is either "off" (failed) or "on" (recovered). We wish to answer connectivity queries…

The personnel rostering problem is the problem of finding an optimal way to assign employees to shifts, subject to a set of hard constraints which all valid solutions must follow, and a set of soft constraints which define the relative…

Different sources of information might tell different stories about the evolutionary history of a given set of species. This leads to (rooted) phylogenetic trees that "disagree" on triples of species, which we call "conflict triples". An…

Dynamical low-rank approximation by tree tensor networks is studied for the data-sparse approximation to large time-dependent data tensors and unknown solutions of tensor differential equations. A time integration method for tree tensor…

A rooted tree $\vec{R}$ is a rooted subtree of a tree $T$ if the tree obtained by replacing the directed edges of $\vec{R}$ by undirected edges is a subtree of $T$. We study the problem of assigning minimum number of colors to a given set…

In geometry processing, numerical optimization methods often involve solving sparse linear systems of equations. These linear systems have a structure that strongly resembles to adjacency graphs of the underlying mesh. We observe how…

For a pair consisting of a gene tree and a species tree, the ancestral configurations at an internal node of the species tree are the distinct sets of gene lineages that can be present at that node. Ancestral configurations appear in…

We study two problems that seek a subtree $T$ of a graph $G=(V,E)$ such that $T$ satisfies a certain property and has minimal maximum degree. - In the Min-Degree Group Steiner Tree problem we are given a collection ${\cal S}$ of groups…

'Tree-based' phylogenetic networks proposed by Francis and Steel have attracted much attention of theoretical biologists in the last few years. At the heart of the definitions of tree-based phylogenetic networks is the notion of 'support…

We consider here the problem of chaining seeds in ordered trees. Seeds are mappings between two trees Q and T and a chain is a subset of non overlapping seeds that is consistent with respect to postfix order and ancestrality. This problem…

Practical optimization problems may contain different kinds of difficulties that are often not tractable if one relies on a particular optimization method. Different optimization approaches offer different strengths that are good at…

Latent tree analysis seeks to model the correlations among a set of random variables using a tree of latent variables. It was proposed as an improvement to latent class analysis --- a method widely used in social sciences and medicine to…

Given a graph $G$ and a digraph $D$ whose vertices are the edges of $G$, we investigate the problem of finding a spanning tree of $G$ that satisfies the constraints imposed by $D$. The restrictions to add an edge in the tree depend on its…

In the first paper (part I) of this series of two, we introduce four novel definitions of the ODT problems: three for size-constrained trees and one for depth-constrained trees. These definitions are stated unambiguously through executable…

This paper investigates multilevel initialization strategies for training very deep neural networks with a layer-parallel multigrid solver. The scheme is based on the continuous interpretation of the training problem as a problem of optimal…