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This paper proposes the estimation of a smooth graphon model for network data analysis using principles of the EM algorithm. The approach considers both variability with respect to ordering the nodes of a network and smooth estimation of…

Methodology · Statistics 2021-09-16 Benjamin Sischka , Göran Kauermann

In this manuscript a unified framework for conducting inference on complex aggregated data in high dimensional settings is proposed. The data are assumed to be a collection of multiple non-Gaussian realizations with underlying undirected…

Applications · Statistics 2013-10-14 Fang Han , Han Liu , Brian Caffo

We consider the problem of estimating the topology of multiple networks from nodal observations, where these networks are assumed to be drawn from the same (unknown) random graph model. We adopt a graphon as our random graph model, which is…

Machine Learning · Statistics 2022-02-14 Madeline Navarro , Santiago Segarra

Graph neural networks (GNNs) are a popular class of parametric model for learning over graph-structured data. Recent work has argued that GNNs primarily use the graph for feature smoothing, and have shown competitive results on benchmark…

Machine Learning · Computer Science 2020-11-20 Lingfan Yu , Jiajun Shen , Jinyang Li , Adam Lerer

In most domains of network analysis researchers consider networks that arise in nature with weighted edges. Such networks are routinely dichotomized in the interest of using available methods for statistical inference with networks. The…

Methodology · Statistics 2016-11-10 James D. Wilson , Matthew J. Denny , Shankar Bhamidi , Skyler Cranmer , Bruce Desmarais

There has been substantial interest in estimating the value of a graph parameter, i.e., of a real-valued function defined on the set of finite graphs, by querying a randomly sampled substructure whose size is independent of the size of the…

Combinatorics · Mathematics 2020-08-12 Carlos Hoppen , Yoshiharu Kohayakawa , Richard Lang , Hanno Lefmann , Henrique Stagni

Graph similarity computation aims to predict a similarity score between one pair of graphs to facilitate downstream applications, such as finding the most similar chemical compounds similar to a query compound or Fewshot 3D Action…

Machine Learning · Computer Science 2021-01-06 Haoyan Xu , Ziheng Duan , Jie Feng , Runjian Chen , Qianru Zhang , Zhongbin Xu , Yueyang Wang

We study the optimal estimation of probability matrices of random graph models generated from graphons. This problem has been extensively studied in the case of step-graphons and H\"older smooth graphons. In this work, we characterize the…

Statistics Theory · Mathematics 2024-10-03 Yuchen Chen , Jing Lei

Finding frequently occurring subgraph patterns or network motifs in neural architectures is crucial for optimizing efficiency, accelerating design, and uncovering structural insights. However, as the subgraph size increases,…

Machine Learning · Computer Science 2026-02-04 Yikang Yang , Zhengxin Yang , Minghao Luo , Luzhou Peng , Hongxiao Li , Wanling Gao , Lei Wang , Jianfeng Zhan

This manuscript considers the following "graph classification" question: given a collection of graphs and associated classes, how can one predict the class of a newly observed graph? To address this question we propose a statistical model…

Applications · Statistics 2012-07-13 Joshua T. Vogelstein , William R. Gray , R. Jacob Vogelstein , Carey E. Priebe

Many real-world data sets can be presented in the form of a matrix whose entries correspond to the interaction between two entities of different natures (number of times a web user visits a web page, a student's grade in a subject, a…

Topological features based on persistent homology capture high-order structural information so as to augment graph neural network methods. However, computing extended persistent homology summaries remains slow for large and dense graphs and…

Machine Learning · Computer Science 2022-11-16 Zuoyu Yan , Tengfei Ma , Liangcai Gao , Zhi Tang , Yusu Wang , Chao Chen

The PageRank of a graph is a scalar function defined on the node set of the graph which encodes nodes centrality information of the graph. In this article, we use the PageRank function along with persistent homology to obtain a scalable…

Computational Geometry · Computer Science 2020-09-15 Mustafa Hajij , Elizabeth Munch , Paul Rosen

One of the longstanding problems in spectral graph clustering (SGC) is the so-called model order selection problem: automated selection of the correct number of clusters. This is equivalent to the problem of finding the number of connected…

Social and Information Networks · Computer Science 2016-09-22 Pin-Yu Chen , Thibaut Gensollen , Alfred O. Hero

We introduce an architecture for processing signals supported on hypergraphs via graph neural networks (GNNs), which we call a Hyper-graph Expansion Neural Network (HENN), and provide the first bounds on the stability and transferability…

Machine Learning · Computer Science 2022-12-14 Mikhail Hayhoe , Hans Riess , Victor M. Preciado , Alejandro Ribeiro

Evaluating the quality of post-hoc explanations for Graph Neural Networks (GNNs) remains a significant challenge. While recent years have seen an increasing development of explainability methods, current evaluation metrics (e.g., fidelity,…

Machine Learning · Computer Science 2026-02-10 Ding Zhang , Siddharth Betala , Chirag Agarwal

We introduce a class of random graphs that we argue meets many of the desiderata one would demand of a model to serve as the foundation for a statistical analysis of real-world networks. The class of random graphs is defined by a…

Statistics Theory · Mathematics 2015-12-11 Victor Veitch , Daniel M. Roy

The growing availability of network data and of scientific interest in distributed systems has led to the rapid development of statistical models of network structure. Typically, however, these are models for the entire network, while the…

Statistics Theory · Mathematics 2022-03-18 Cosma Rohilla Shalizi , Alessandro Rinaldo

Persistent homology is a tool from Topological Data Analysis (TDA) used to summarize the topology underlying data. It can be conveniently represented through persistence diagrams. Observing a noisy signal, common strategies to infer its…

Statistics Theory · Mathematics 2024-08-28 Hugo Henneuse

Many popular network models rely on the assumption of (vertex) exchangeability, in which the distribution of the graph is invariant to relabelings of the vertices. However, the Aldous-Hoover theorem guarantees that these graphs are dense or…

Machine Learning · Statistics 2017-02-07 Diana Cai , Trevor Campbell , Tamara Broderick