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Estimating population-level prevalence and transmission dynamics of wildlife pathogens can be challenging, partly because surveillance data is sparse, detection-driven, and unevenly sequenced. Using highly pathogenic avian influenza A/H5…

Populations and Evolution · Quantitative Biology 2026-01-16 Haley Stone , Jing Du , Yang Yang , Ashna Desai , Rebecca Dawson , Hao Xue , David Heslop , Matthew Scotch , Andreas Züfle , C. Raina MacIntyre , Flora Salim

Effective intervention strategies for epidemics rely on the identification of their origin and on the robustness of the predictions made by network disease models. We introduce a Bayesian uncertainty quantification framework to infer model…

Populations and Evolution · Quantitative Biology 2020-04-02 Karen Larson , Clark Bowman , Zhizhong Chen , Panagiotis Hadjidoukas , Costas Papadimitriou , Petros Koumoutsakos , Anastasios Matzavinos

An efficient strategy for the identification of influential spreaders that could be used to control epidemics within populations would be of considerable importance. Generally, populations are characterized by its community structures and…

Physics and Society · Physics 2018-10-23 Shi-Long Luo , Kai Gong , Li Kang

Health-policy planning requires evidence on the burden that epidemics place on healthcare systems. Multiple, often dependent, datasets provide a noisy and fragmented signal from the unobserved epidemic process including transmission and…

Applications · Statistics 2024-09-11 Alice Corbella , Anne M Presanis , Paul J Birrell , Daniela De Angelis

To control infection spreading on networks, we investigate the effect of observer nodes that recognize infection in a neighboring node and make the rest of the neighbor nodes immune. We numerically show that random placement of observer…

Physics and Society · Physics 2014-07-15 Taro Takaguchi , Takehisa Hasegawa , Yuichi Yoshida

The study of epidemic spreading on populations of networked individuals has seen recently a great deal of significant progresses. A common point of all past studies is, however, that there is only one peak of infected density in each single…

Physics and Society · Physics 2018-05-09 Muhua Zheng , Wei Wang , Ming Tang , Jie Zhou , S. Boccaletti , Zonghua Liu

The susceptible--infected--susceptible (SIS) epidemic process on complex networks can show metastability, resembling an endemic equilibrium. In a general setting, the metastable state may involve a large portion of the network, or it can be…

Physics and Society · Physics 2016-05-03 Faryad Darabi Sahneh , Aram Vajdi , Caterina Scoglio

In this paper, the authors develop a method of detecting correlations between epidemic patterns in different regions that are due to human movement and introduce a null model in which the travel-induced correlations are cancelled. They…

Populations and Evolution · Quantitative Biology 2008-06-24 Pascal Crépey , Marc Barthélemy

We consider the problem of learning the weighted edges of a graph by observing the noisy times of infection for multiple epidemic cascades on this graph. Past work has considered this problem when the cascade information, i.e., infection…

Social and Information Networks · Computer Science 2019-08-13 Jessica Hoffmann , Constantine Caramanis

Sensor placement for the purpose of detecting/tracking news outbreak and preventing rumor spreading is a challenging problem in a large scale online social network (OSN). This problem is a kind of subset selection problem: choosing a small…

Social and Information Networks · Computer Science 2013-12-09 Junzhou Zhao , John C. S. Lui , Don Towsley , Xiaohong Guan , Pinghui Wang

One of the famous results of network science states that networks with heterogeneous connectivity are more susceptible to epidemic spreading than their more homogeneous counterparts. In particular, in networks of identical nodes it has been…

Physics and Society · Physics 2015-08-05 Hui Yang , Ming Tang , Thilo Gross

When an epidemic spreads into a population, it is often unpractical or impossible to have a continuous monitoring of all subjects involved. As an alternative, algorithmic solutions can be used to infer the state of the whole population from…

Populations and Evolution · Quantitative Biology 2021-05-12 Abhishek Tomy , Matteo Razzanelli , Francesco Di Lauro , Daniela Rus , Cosimo Della Santina

Epidemics occur in all shapes and forms: infections propagating in our sparse sexual networks, rumours and diseases spreading through our much denser social interactions, or viruses circulating on the Internet. With the advent of large…

Physics and Society · Physics 2013-09-02 Laurent Hébert-Dufresne , Antoine Allard , Jean-Gabriel Young , Louis J. Dubé

In this paper, a branching process approximation for the spread of a Reed-Frost epidemic on a network with tunable clustering is derived. The approximation gives rise to expressions for the epidemic threshold and the probability of a large…

Probability · Mathematics 2007-08-30 Tom Britton , Maria Deijfen , Andreas Nordvall Lagerås , Mathias Lindholm

This study presents a method to discover an outbreak of an infectious disease in a region for which data are missing, but which is at work as a disease spreader. Node discovery for the spread of an infectious disease is defined as…

Artificial Intelligence · Computer Science 2011-10-18 Yoshiharu Maeno

We study the problem of estimating the origin of an epidemic outbreak -- given a contact network and a snapshot of epidemic spread at a certain time, determine the infection source. Finding the source is important in different contexts of…

Physics and Society · Physics 2014-11-20 Andrey Y. Lokhov , Marc Mézard , Hiroki Ohta , Lenka Zdeborová

Infectious diseases typically spread over a contact network with millions of individuals, whose sheer size is a tremendous challenge to analysing and controlling an epidemic outbreak. For some contact networks, it is possible to group…

Physics and Society · Physics 2021-07-23 Bastian Prasse , Karel Devriendt , Piet Van Mieghem

Community detection is one of the fundamental problems in the study of network data. Most existing community detection approaches only consider edge information as inputs, and the output could be suboptimal when nodal information is…

Methodology · Statistics 2016-12-13 Haolei Weng , Yang Feng

Network analysis is currently used in a myriad of contexts: from identifying potential drug targets to predicting the spread of epidemics and designing vaccination strategies, and from finding friends to uncovering criminal activity.…

Data Analysis, Statistics and Probability · Physics 2010-04-28 R. Guimera , M. Sales-Pardo

In many real-world scenarios, it is nearly impossible to collect explicit social network data. In such cases, whole networks must be inferred from underlying observations. Here, we formulate the problem of inferring latent social networks…

Social and Information Networks · Computer Science 2010-10-28 Seth A. Myers , Jure Leskovec