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The accurate sampling of protein dynamics is an ongoing challenge despite the utilization of High-Performance Computers (HPC) systems. Utilizing only "brute force" MD simulations requires an unacceptably long time to solution. Adaptive…

Quantitative Methods · Quantitative Biology 2020-09-25 Eugen Hruska , Vivekanandan Balasubramanian , Hyungro Lee , Shantenu Jha , Cecilia Clementi

Spatially-coupled (SC) codes, known for their threshold saturation phenomenon and low-latency windowed decoding algorithms, are ideal for streaming applications. They also find application in various data storage systems because of their…

Information Theory · Computer Science 2021-01-26 Siyi Yang , Ahmed Hareedy , Shyam Venkatasubramanian , Robert Calderbank , Lara Dolecek

Recent increases in supercomputing power, driven by the multi-core revolution and accelerators such as the IBM Cell processor, graphics processing units (GPUs) and Intel's Many Integrated Core (MIC) technology have enabled kinetic…

The article is aimed to address a mutually boosting use of asymptotic analysis and machine learning, for fast stiffness design of configurations infilled with smoothly-varying graded microstructures. The discussion is conducted in the…

Numerical Analysis · Mathematics 2021-11-15 Chuang Ma , Dingchuan Xue , Shaoshuai Li , Zhengcheng Zhou , Yichao Zhu , Xu Guo

High performance calculation is increasingly used within society. Previously reserved for an elite, based on large computing and storage infrastructures, it is now a core module for many companies. Indeed, high performance calculation makes…

Computers and Society · Computer Science 2019-12-10 Cyrille Bonamy , Laurent Lefèvre , Gabriel Moreau

This research work is part of a PhD project aiming to design a new helicon plasma thruster for cargo space missions, within a collaboration between the School of Aerospace Engineering of La Sapienza University and the ENEA Frascati research…

Numerical simulations of fluids in astrophysics and computational fluid dynamics (CFD) are among the most computationally-demanding calculations, in terms of sustained floating-point operations per second, or FLOP/s. It is expected that…

Exascale computing will get mankind closer to solving important social, scientific and engineering problems. Due to high prototyping costs, High Performance Computing (HPC) system architects make use of simulation models for design space…

Performance · Computer Science 2018-03-28 Alexandra Ferreron , Radhika Jagtap , Sascha Bischoff , Roxana Rusitoru

The high-performance computing (HPC) landscape is undergoing rapid transformation, with an increasing emphasis on energy-efficient and heterogeneous computing environments. This comprehensive study extends our previous research on SYCL's…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-04-15 Manuel Costanzo , Enzo Rucci , Carlos García-Sánchez , Marcelo Naiouf , Manuel Prieto-Matías

We continue our presentation of VINE. We begin with a description of relevant architectural properties of the serial and shared memory parallel computers on which VINE is intended to run, and describe their influences on the design of the…

Astrophysics · Physics 2009-10-02 Andrew F. Nelson , M. Wetzstein , T. Naab , .

Interest in parallel architectures applied to real time selections is growing in High Energy Physics (HEP) experiments. In this paper we describe performance measurements of Graphic Processing Units (GPUs) and Intel Many Integrated Core…

Instrumentation and Detectors · Physics 2014-11-26 S. Amerio , D. Bastieri , M. Corvo , A. Gianelle , W. Ketchum , T. Liu , A. Lonardo , D. Lucchesi , S. Poprocki , R. Rivera , L. Tosoratto , P. Vicini , P. Wittich

The VERTEX code is employed for multi-dimensional neutrino-radiation hydrodynamics simulations of core-collapse supernova explosions from first principles. The code is considered state-of-the-art in supernova research and it has been used…

Computational Physics · Physics 2014-04-08 Andreas Marek , Markus Rampp , Florian Hanke , Hans-Thomas Janka

Developing and redesigning astrophysical, cosmological, and space plasma numerical codes for existing and next-generation accelerators is critical for enabling large-scale simulations. To address these challenges, the SPACE Center of…

Technological advances in the past decade, hardware and software alike, have made access to high-performance computing (HPC) easier than ever. We review these advances from a statistical computing perspective. Cloud computing makes access…

Computation · Statistics 2021-07-19 Seyoon Ko , Hua Zhou , Jin J. Zhou , Joong-Ho Won

As high-performance computing (HPC) systems rapidly evolve, with increasing on-node parallelism and widespread use of accelerators, understanding how the code maps to hardware is essential for reaching optimal performance. Benchmarks are…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-11 Michael McKinsey , Stephanie Brink , Olga Pearce

In Software Product Line Engineering (SPLE) families of systems are designed, rather than developing the individual systems independently. Combinatorial Interaction Testing has proven to be effective for testing in the context of SPLE,…

Software Engineering · Computer Science 2013-12-06 Evelyn Nicole Haslinger , Roberto E. Lopez-Herrejon , Alexander Egyed

By advances in technology, integrated circuits have come to include more functionality and more complexity in a single chip. Although methods of testing have improved, but the increase in complexity of circuits, keeps testing a challenging…

Hardware Architecture · Computer Science 2017-11-27 Elaheh Sadredini , Mohammadreza Najafi , Mahmood Fathy , Zaialabedin Navabi

Density functionals at the level of the Generalized Gradient Approximation (GGA) and a plane-wave basis set are widely used today to perform ab initio molecular dynamics (AIMD) simulations. Going up in the ladder of accuracy of density…

Computational Physics · Physics 2021-10-18 Sagarmoy Mandal , Ritama Kar , Tobias Kloeffel , Bernd Meyer , Nisanth N. Nair

In the push for exascale computing, energy efficiency is of utmost concern. System architectures often adopt accelerators to hasten application execution at the cost of power. The Intel Xeon Phi co-processor is unique accelerator that…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-05-26 Gary Lawson , Masha Sosonkina , Yuzhong Shen

This technical report covers a set of experiments on the 64-core SPARC T3-4 system, comparing it to two similar AMD and Intel systems. Key characteristics as maximum integer and floating point arithmetic throughput are measured as well as…

Performance · Computer Science 2011-06-17 Michiel W. van Tol