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A model of growth of icosahedral viral capsids is proposed. It takes into account the diversity of hexamers' compositions, leading to definite capsid size. We show that the observed yield of capsid production implies a very high level of…

Quantitative Methods · Quantitative Biology 2007-05-23 Richard Kerner

Colloidal membranes, self assembled monolayers of aligned rod like molecules, offer a template for designing membranes with definite shapes and curvature, and possibly new functionalities in the future. Often the constituent rods, due to…

Soft Condensed Matter · Physics 2020-07-31 Sk Ashif Akram , Arabinda Behera , Prerna Sharma , Anirban Sain

Density-functional theory is used to investigate the phase behavior of colloidal binary hard-platelet and hard-rod fluids near a single hard wall or confined in a slit pore. The Zwanzig model, in which the orientations of the particles of…

Statistical Mechanics · Physics 2009-11-07 L. Harnau , S. Dietrich

By constructing a Landau-like energy functional, we investigate the molecular organization of a three-component mixture in cell membranes. In the strongly interacting limit, we model the interaction between molecules using pseudospin…

Biological Physics · Physics 2020-05-12 Austin Osby , Theja N. De Silva

Proteinoids are solidified gels made from poly(amino acids) based polymers that exhibit oscillatory electrical activity. It has been proposed that proteinoids are capable of performing analog computing as their electrical activity can be…

Self-assembly of chiral particles with an L-shape is explored by Monte-Carlo computer simulations in two spatial dimensions. For sufficiently high packing densities in confinement, a carpet-like texture emerges due to the interlocking of…

Soft Condensed Matter · Physics 2023-05-10 Paul A. Monderkamp , Rika S. Windisch , René Wittmann , Hartmut Löwen

We present a combined theoretical and experimental study of the buckling of a thin film wrapped around a sphere under the action of capillary forces. A rigid sphere is coated with a wetting liquid, and then wrapped by a thin film into an…

Soft Condensed Matter · Physics 2015-06-05 J. Hure , B. Audoly

The problem of RNA genomes packaged inside spherical viruses is studied. The viral capsid is modeled as a hollowed sphere. The attraction between RNA molecules and the inner viral capsid is assumed to be non-specific and occurs at the inner…

Soft Condensed Matter · Physics 2009-11-13 Se Il Lee , T. T. Nguyen

Colloidal particles dispersed in a liquid crystal lead to distortions of the director field. The distortions are responsible for long-range effective colloidal interactions whose asymptotic behaviour is well understood. The short distance…

Soft Condensed Matter · Physics 2015-06-04 M. Tasinkevych , N. M. Silvestre , M. M. Telo da Gama

We propose and analyze a class of vectorial crystallization problems, with applications to crystallization of anisotropic molecules and collective behavior such as birds flocking and fish schooling. We focus on two-dimensional systems of…

Mathematical Physics · Physics 2021-02-26 Lucia De Luca , Angelo Ninno , Marcello Ponsiglione

Lipid rafts are hypothesized to facilitate protein interaction, tension regulation, and trafficking in biological membranes, but the mechanisms responsible for their formation and maintenance are not clear. Insights into many other…

Soft Condensed Matter · Physics 2017-04-12 Louis Kang , T. C. Lubensky

The electronic structure of crystalline CdTe, CdO, $\alpha$-TeO$_2$, CdTeO$_3$ and Cd$_3$TeO$_6$ is studied by means of first principles calculations. The band structure, total and partial density of states, and charge densities are…

Materials Science · Physics 2009-11-10 Eduardo Ariel Menendez Proupin , Gonzalo Gutierrez , Ernesto Palmero , J. L. Peña

The collective reorganization of electrons into a charge density wave has long served as a textbook example of an ordered phase in condensed matter physics. Two-dimensional square lattices with $p$ electrons are well-suited to the…

Mesoscale and Nanoscale Physics · Physics 2025-04-01 Xinglu Que , Qingyu He , Lihui Zhou , Shiming Lei , Leslie Schoop , Dennis Huang , Hidenori Takagi

The channel size distribution in hard sphere systems, based on the local neighbor correlation of four particle positions, is investigated for all volume fractions up to jamming. For each particle, all three particle combinations of…

Disordered Systems and Neural Networks · Physics 2015-06-19 Vitaliy Ogarko , Nicolas Rivas , Stefan Luding

Recent advances in experiment and theory suggest that superfluid $^3$He under planar confinement may form a pair density wave (PDW) whereby superfluid and crystalline orders coexist. While a natural candidate for this phase is a…

Superconductivity · Physics 2022-01-10 Pramodh Senarath Yapa , Rufus Boyack , Joseph Maciejko

We report on numerical studies of two-dimensional electron systems in the presence of a perpendicular magnetic field, with a high Landau level index (N > 1) half filled by electrons. Strong and sharp peaks are found in the wave vector…

Mesoscale and Nanoscale Physics · Physics 2009-10-31 E. H. Rezayi , F. D. M. Haldane , Kun Yang

This work reports a new methodology aimed at describing characteristics of protein structural shapes, and suggests a framework in which to resolve or classify automatically such structures into known families. This new approach to protein…

Quantitative Methods · Quantitative Biology 2007-05-23 Marconi Soares Barbosa , Rinaldo Wander Montalvao , Tom Blundell , Luciano da Fontoura Costa

A fundamental goal of research in molecular biology is to understand protein structure. Protein crystallography is currently the most successful method for determining the three-dimensional (3D) conformation of a protein, yet it remains…

Artificial Intelligence · Computer Science 2014-11-17 L. Leherte , J. Glasgow , K. Baxter , E. Steeg , S. Fortier

Representative wave functions, which encode the topological properties of the spin polarized fractional quantum Hall states in the lowest Landau level, can be expressed in terms of correlation functions in conformal field theories. Until…

Strongly Correlated Electrons · Physics 2013-05-29 Thomas Kvorning

Spatial organization of proteins in cells is important for many biological functions. In general, the nonlinear, spatially coupled models for protein-pattern formation are only accessible to numerical simulations, which has limited insight…

Pattern Formation and Solitons · Physics 2021-04-16 Fridtjof Brauns , Jacob Halatek , Erwin Frey