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The Poisson-Boltzmann equation (PBE) is a nonlinear elliptic PDE that arises in biomolecular modeling and is a fundamental tool for structural biology. It is used to calculate electrostatic potentials around an ensemble of fixed charges…

Numerical Analysis · Mathematics 2017-10-12 Cleophas Kweyu , Lihong Feng , Matthias Stein , Peter Benner

The finite element method (FEM) is a cornerstone numerical technique for solving partial differential equations (PDEs). Here, we present $\textbf{Qu-FEM}$, a fault-tolerant era quantum algorithm for the finite element method. In contrast to…

Quantum Physics · Physics 2025-10-22 Ahmad M. Alkadri , Tyler D. Kharazi , K. Birgitta Whaley , Kranthi K. Mandadapu

The immersed interface method (IIM) for models of fluid flow and fluid-structure interaction imposes jump conditions that capture stress discontinuities generated by forces that are concentrated along immersed boundaries. Most prior work…

Numerical Analysis · Mathematics 2025-06-04 Michael J. Facci , Ebrahim M. Kolahdouz , Boyce E. Griffith

Different hybrid quantum-classical algorithms have recently been developed as a near-term way to solve linear systems of equations on quantum devices. However, the focus has so far been mostly on the methods, rather than the problems that…

Computational Engineering, Finance, and Science · Computer Science 2024-12-09 Giorgio Tosti Balducci , Boyang Chen , Matthias Möller , Roeland De Breuker

In this work we propose a simple but effective high order polynomial correction allowing to enhance the consistency of all kind of boundary conditions for the Euler equations (Dirichlet, characteristic far-field and slip-wall), both in 2D…

Numerical Analysis · Mathematics 2022-09-30 Mirco Ciallella , Elena Gaburro , Marco Lorini , Mario Ricchiuto

We consider the problem of simultaneously inferring the heterogeneous coefficient field for a Robin boundary condition on an inaccessible part of the boundary along with the shape of the boundary for the Poisson problem. Such a problem…

Optimization and Control · Mathematics 2022-01-05 Ruanui Nicholson , Matti Niskanen

In this paper we present a one dimensional second order accurate method to solve Elliptic equations with discontinuous coefficients on an arbitrary interface. Second order accuracy for the first derivative is obtained as well. The method is…

Numerical Analysis · Mathematics 2011-11-07 Armando Coco , Giovanni Russo

Computational fluid dynamics (CFD) studies have been increasingly used for blood flow simulations in intracranial aneurysms (ICAs). However, despite the continuous progress of body-fitted CFD solvers, generating a high quality mesh is still…

Computational Engineering, Finance, and Science · Computer Science 2020-07-28 D. S. Lampropoulos , G. C. Bourantas , B. F. Zwick , G. C. Kagadis , A. Wittek , K. Miller , V. C. Loukopoulos

In this paper, we propose a mesh-free method to solve interface problems using the deep learning approach. Two interface problems are considered. The first one is an elliptic PDE with a discontinuous and high-contrast coefficient. While the…

Computational Physics · Physics 2024-12-20 Zhongjian Wang , Zhiwen Zhang

Over the past years, inverse problems in partial differential equations have garnered increasing interest among scientists and engineers. However, due to the lack of conventional stability, nonlinearity and non-convexity, these problems are…

Numerical Analysis · Mathematics 2025-03-11 Feng Chen , Kegan Li , Yiran Meng , Zhiyi Xiao , Pengqi Wu

Simulating the dynamic characteristics of a PN junction at the microscopic level requires solving the Poisson's equation at every time step. Solving at every time step is a necessary but time-consuming process when using the traditional…

Computational Physics · Physics 2018-10-26 Zhongyang Zhang , Ling Zhang , Ze Sun , Nicholas Erickson , Ryan From , Jun Fan

This paper presents a fast "two-dimensional Fourier Continuation" (2D-FC) method for the construction of biperiodic extensions of smooth, non-periodic functions defined over general two-dimensional (2D) domains, including domains with…

Numerical Analysis · Mathematics 2026-04-27 Oscar P. Bruno , Allen Yang

Fully connected multilayer perceptrons are used for obtaining numerical solutions of partial differential equations in various dimensions. Independent variables are fed into the input layer, and the output is considered as solution's value.…

Neural and Evolutionary Computing · Computer Science 2020-01-28 V. I. Avrutskiy

Computation of bounding boxes is a fundamental problem in high performance rendering, as it is an input to visibility culling and binning operations. In a scene description structured as a tree, clip nodes and blend nodes entail…

Graphics · Computer Science 2022-05-25 Raph Levien

Common efficient schemes for the incompressible Navier-Stokes equations, such as projection or fractional step methods, have limited temporal accuracy as a result of matrix splitting errors, or introduce errors near the domain boundaries…

Numerical Analysis · Mathematics 2015-05-20 David Shirokoff , Rodolfo Ruben Rosales

The Immersed Boundary Method (IBM) is one of the popular one-fluid mixed Eulerian-Lagrangian methods to simulate motion of droplets. While the treatment of a moving complex boundary is an extremely time consuming and formidable task in a…

Computational Physics · Physics 2018-07-30 Chia Rui Ong , Hiroaki Miura

A fast Poisson solver software package PoisFFT is presented. It is available as a free software licensed under the GNU GPL license version 3. The package uses the fast Fourier transform to directly solve the Poisson equation on a uniform…

Numerical Analysis · Mathematics 2016-04-20 Vladimír Fuka

Deep neural network approaches show promise in solving partial differential equations. However, unlike traditional numerical methods, they face challenges in enforcing essential boundary conditions. The widely adopted penalty-type methods,…

Numerical Analysis · Mathematics 2026-05-06 Haijun Yu , Shuo Zhang

This paper presents a high-order deferred correction algorithm combined with penalty iteration for solving free and moving boundary problems, using a fourth-order finite difference method. Typically, when free boundary problems are solved…

Numerical Analysis · Mathematics 2023-01-20 Dawei Wang , Kirill Serkh , Christina Christara

For a wide class of polynomially nonlinear systems of partial differential equations we suggest an algorithmic approach to the s(trong)-consistency analysis of their finite difference approximations on Cartesian grids. First we apply the…

Symbolic Computation · Computer Science 2019-05-01 Vladimir P. Gerdt , Daniel Robertz