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We consider a model of large regulatory gene expression networks where the thresholds activating the sigmoidal interactions between genes and the signs of these interactions are shuffled randomly. Such an approach allows for a qualitative…

Molecular Networks · Quantitative Biology 2007-05-23 D. Volchenkov , R. Lima

We discuss the complex dynamics of a non-linear random networks model, as a function of the connectivity k between the elements of the network. We show that this class of networks exhibit an order-chaos phase transition for a critical…

Adaptation and Self-Organizing Systems · Physics 2013-05-29 M. Andrecut , S. A. Kauffman

Many real-world networks depend on other networks, often in non-trivial ways, to maintain their functionality. These interdependent "networks of networks" are often extremely fragile. When a fraction $1-p$ of nodes in one network randomly…

Physics and Society · Physics 2013-11-20 L. D. Valdez , P. A. Macri , H. E. Stanley , L. A. Braunstein

Financial networks are dynamic. To assess their systemic importance to the world-wide economic network and avert losses we need models that take the time variations of the links and nodes into account. Using the methodology of classical…

Risk Management · Quantitative Finance 2014-12-10 Nima Dehmamy , Sergey V. Buldyrev , Shlomo Havlin , H. Eugene Stanley , Irena Vodenska

Can the topology of a network that consists of many particles interacting with each other change in complexity when a phase transition occurs? The answer to this question is particularly interesting to understand the nature of phase…

Statistical Mechanics · Physics 2014-08-12 Chung-Pin Chou

We study Hopfield networks with non-reciprocal coupling inducing switches between memory patterns. Dynamical phase transitions occur between phases of no memory retrieval, retrieval of multiple point-attractors, and limit-cycle attractors.…

Disordered Systems and Neural Networks · Physics 2025-10-21 Shuyue Xue , Mohammad Maghrebi , George I. Mias , Carlo Piermarocchi

This paper considers the dynamics of edges in a network. The Dynamic Bond Percolation (DBP) process models, through stochastic local rules, the dependence of an edge $(a,b)$ in a network on the states of its neighboring edges. Unlike…

Physics and Society · Physics 2016-01-13 June Zhang , José M. F. Moura

Many complex networks are known to exhibit sudden transitions between alternative steady states with contrasting properties. Such a sudden transition demonstrates a network's resilience, which is the ability of a system to persist in the…

Adaptation and Self-Organizing Systems · Physics 2021-02-24 Subhendu Bhandary , Taranjot Kaur , Tanmoy Banerjee , Partha Sharathi Dutta

Regulatory networks describe the interactions between molecular or cellular regulators, like transcription factors and genes in gene regulatory networks, kinases and their receptors in signalling networks, or neurons in neural networks. A…

Molecular Networks · Quantitative Biology 2022-12-29 Niklas Bonacker , Johannes Berg

We provide a phenomenological theory for topological transitions in restructuring networks. In this statistical mechanical approach energy is assigned to the different network topologies and temperature is used as a quantity referring to…

Statistical Mechanics · Physics 2016-08-31 Gergely Palla , Imre Derenyi , Illes Farkas , Tamas Vicsek

We introduce a new class of latent process models for dynamic relational network data with the goal of detecting time-dependent structure. Network data are often observed over time, and static network models for such data may fail to…

Methodology · Statistics 2013-11-15 Lucy F. Robinson , Carey E. Priebe

In epidemiological modelling, dynamics on networks, and in particular adaptive and heterogeneous networks have recently received much interest. Here we present a detailed analysis of a previously proposed model that combines heterogeneity…

Physics and Society · Physics 2016-09-21 Hui Yang , Tim Rogers , Thilo Gross

In order to maintain consistent quality of service, computer network engineers face the task of monitoring the traffic fluctuations on the individual links making up the network. However, due to resource constraints and limited access, it…

Applications · Statistics 2010-05-26 Joel Vaughan , Stilian A. Stoev , George Michailidis

We present a simple model that enables us to analytically characterize a floppy to rigid transition and an associated self-adaptive intermediate phase in a random bond network. In this intermediate phase, the network adapts itself to lower…

Statistical Mechanics · Physics 2009-11-10 J. Barre' , A. R. Bishop , T. Lookman , A. Saxena

A growing body of studies on systemic risk in financial markets has emphasized the key importance of taking into consideration the complex interconnections among financial institutions. Much effort has been put in modeling the contagion…

In the study of dynamical processes on networks, there has been intense focus on network structure -- i.e., the arrangement of edges and their associated weights -- but the effects of the temporal patterns of edges remains poorly…

Physics and Society · Physics 2015-06-16 Till Hoffmann , Mason A. Porter , Renaud Lambiotte

Epidemics on complex networks is a widely investigated topic in the last few years, mainly due to the last pandemic events. Usually, real contact networks are dynamic, hence much effort has been invested in studying epidemics on evolving…

Physics and Society · Physics 2022-05-18 Hillel Sanhedrai , Shlomo Havlin

Drawing inspiration from real world interacting systems we study a system consisting of two networks that exhibit antagonistic and dependent interactions. By antagonistic and dependent interactions, we mean, that a proportion of functional…

Physics and Society · Physics 2016-06-17 Bhushan Kotnis , Joy Kuri

Time-discrete dynamical systems on a finite state space have been used with great success to model natural and engineered systems such as biological networks, social networks, and engineered control systems. They have the advantage of being…

Combinatorics · Mathematics 2015-03-17 Alan Veliz-Cuba , Reinhard Laubenbacher

We develop a probabilistic framework for global modeling of the traffic over a computer network. This model integrates existing single-link (-flow) traffic models with the routing over the network to capture the global traffic behavior. It…

Networking and Internet Architecture · Computer Science 2010-05-25 Stilian A. Stoev , George Michailidis , Joel Vaughan