Related papers: On Combinatorial Generation of Prefix Normal Words
We develop necessary and sufficient conditions and a novel provably consistent and efficient algorithm for discovering topics (latent factors) from observations (documents) that are realized from a probabilistic mixture of shared latent…
A word is said to be bordered if it contains a nonempty proper prefix that is also a suffix. A pair of words $(u, v)$ is said to be mutually bordered if there exists a word that is a nonempty proper prefix of $u$ and suffix of $v$, and…
The data on 13 typologically different languages have been processed using a two-parameter word length model, based on 1-displaced uniform Poisson distribution. Statistical dependencies of the 2nd parameter on the 1st one are revealed for…
Grammar compression is a general compression framework in which a string $T$ of length $N$ is represented as a context-free grammar of size $n$ whose language contains only $T$. In this paper, we focus on studying the limitations of…
A factorization $f_1, \ldots, f_m$ of a string $w$ of length $n$ is called a repetition factorization of $w$ if $f_i$ is a repetition, i.e., $f_i$ is a form of $x^kx'$, where $x$ is a non-empty string, $x'$ is a (possibly-empty) proper…
Overlap-free words are words over the binary alphabet $A=\{a, b\}$ that do not contain factors of the form $xvxvx$, where $x \in A$ and $v \in A^*$. We analyze the asymptotic growth of the number $u_n$ of overlap-free words of length $n$ as…
Natural languages are complexly structured entities. They exhibit characterising regularities that can be exploited to link them one another. In this work, I compare two morphological aspects of languages: Written Patterns and Sentence…
A string is said to be closed if its length is one, or if it has a non-empty factor that occurs both as a prefix and as a suffix of the string, but does not occur elsewhere. The notion of closed words was introduced by [Fici, WORDS 2011].…
We consider the following problem. Let us fix a finite alphabet A; for any given d-uple of letter frequencies, how to construct an infinite word u over the alphabet A satisfying the following conditions: u has linear complexity function, u…
Words are fundamental linguistic units that connect thoughts and things through meaning. However, words do not appear independently in a text sequence. The existence of syntactic rules induces correlations among neighboring words. Using an…
We characterize the clustering of a word under the Burrows-Wheeler transform in terms of the resolution of a bounded number of bispecial factors belonging to the language generated by all its powers. We use this criterion to compute, in…
In [A. Frid, S. Puzynina, L.Q. Zamboni, \textit{On palindromic factorization of words}, Adv. in Appl. Math. 50 (2013), 737-748], it was conjectured that any infinite word whose palindromic lengths of factors are bounded is ultimately…
The deviation of the observed frequency of a word $w$ from its expected frequency in a given sequence $x$ is used to determine whether or not the word is avoided. This concept is particularly useful in DNA linguistic analysis. The value of…
The avoidability of binary patterns by binary cube-free words is investigated and the exact bound between unavoidable and avoidable patterns is found. All avoidable patterns are shown to be D0L-avoidable. For avoidable patterns, the growth…
Two finite words $u$ and $v$ are $k$-binomially equivalent if, for each word $x$ of length at most $k$, $x$ appears the same number of times as a subsequence (i.e., as a scattered subword) of both $u$ and $v$. This notion generalizes…
We show how, given a straight-line program with $g$ rules for a binary string $B$ of length $n$, in $O(g^{2 / 3} n^{4 / 3})$ time we can build a linear-space index such that, given $m$ and $c$, in O(1) time we can determine whether there is…
High-throughput sequencing technologies have led to explosive growth of genomic databases; one of which will soon reach hundreds of terabytes. For many applications we want to build and store indexes of these databases but constructing such…
This thesis investigates three biologically inspired operations: prefix-suffix duplication, bounded prefix-suffix duplication, and prefix-suffix-square completion. Duplication, a common genetic mutation, involves repeating DNA sequences and…
Let two static sequences of strings $P$ and $S$, representing prefix and suffix conditions respectively, be given as input for preprocessing. For the query, let two positive integers $k_1$ and $k_2$ be given, as well as a string $T$ given…
The equivalence problem for unambiguous grammars is an important, but very difficult open question in formal language theory. Consider the \emph{limited} equivalence problem for unambiguous grammars -- for two unambiguous grammars $G_1$ and…