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We address the practical problems of estimating the information relations that characterize large networks. Building on methods developed for analysis of the neural code, we show that reliable estimates of mutual information can be obtained…

Information Theory · Computer Science 2007-07-13 Noam Slonim , Gurinder S. Atwal , Gasper Tkacik , William Bialek

Networks often possess mesoscale structures, and studying them can yield insights into both structure and function. It is most common to study community structure, but numerous other types of mesoscale structures also exist. In this paper,…

Physics and Society · Physics 2014-03-21 Sang Hoon Lee , Mihai Cucuringu , Mason A. Porter

Many complex networks display a mesoscopic structure with groups of nodes sharing many links with the other nodes in their group and comparatively few with nodes of different groups. This feature is known as community structure and encodes…

Physics and Society · Physics 2009-07-31 Andrea Lancichinetti , Santo Fortunato

Large-scale human social network structure is typically inferred from digital trace samples of online social media platforms or mobile communication data. Instead, here we investigate the social network structure of a complete population,…

Physics and Society · Physics 2022-11-29 Eszter Bokányi , Eelke M. Heemskerk , Frank W. Takes

Core-periphery structure is a common property of complex networks, which is a composition of tightly connected groups of core vertices and sparsely connected periphery vertices. This structure frequently emerges in traffic systems, biology,…

Social and Information Networks · Computer Science 2019-05-28 Junteng Jia , Austin R. Benson

Numerical analysis of data from international trade and ecological networks has shown that the non-linear fitness-complexity metric is the best candidate to rank nodes by importance in bipartite networks that exhibit a nested structure.…

Economics · Quantitative Finance 2018-06-04 Rui-Jie Wu , Gui-Yuan Shi , Yi-Cheng Zhang , Manuel Sebastian Mariani

Many real-world networks such as the gene networks, protein-protein interaction networks and metabolic networks exhibit community structures, meaning the existence of groups of densely connected vertices in the networks. Many local…

Physics and Society · Physics 2016-03-25 Ju Xiang , Ke Hu , Yan Zhang , Mei-Hua Bao , Liang Tang , Yan-Ni Tang , Yuan-Yuan Gao , Jian-Ming Li , Benyan Chen , Jing-Bo Hu

Networks are a fundamental model of complex systems throughout the sciences, and network datasets are typically analyzed through lower-order connectivity patterns described at the level of individual nodes and edges. However, higher-order…

Social and Information Networks · Computer Science 2018-02-21 Austin R. Benson

Recent decades have seen the discovery of numerous complex materials. At the root of the complexity underlying many of these materials lies a large number of possible contending atomic- and larger-scale configurations and the intricate…

Materials Science · Physics 2023-01-30 P. Ronhovde , S. Chakrabarty , M. Sahu , K. K. Sahu , K. F. Kelton , N. Mauro , Z. Nussinov

Many networks can be usefully decomposed into a dense core plus an outlying, loosely-connected periphery. Here we propose an algorithm for performing such a decomposition on empirical network data using methods of statistical inference. Our…

Social and Information Networks · Computer Science 2015-06-22 Xiao Zhang , Travis Martin , M. E. J. Newman

We address the question of finding the community structure of a complex network. In an earlier effort [H. Zhou, {\em Phys. Rev. E} (2003)], the concept of network random walking is introduced and a distance measure defined. Here we…

Biological Physics · Physics 2009-11-10 Haijun Zhou

This paper leverages linear systems theory to propose a principled measure of complexity for network systems. We focus on a network of first-order scalar linear systems interconnected through a directed graph. By locally filtering out the…

Systems and Control · Electrical Eng. & Systems 2025-07-10 Giacomo Baggio , Marco Fabris

We develop information-theoretic measures of spatial structure and pattern in more than one dimension. As is well known, the entropy density of a two-dimensional configuration can be efficiently and accurately estimated via a converging…

Statistical Mechanics · Physics 2009-11-07 David P. Feldman , James P. Crutchfield

Data classification techniques partition the data or feature space into smaller sub-spaces, each corresponding to a specific class. To classify into subspaces, physical features e.g., distance and distributions are utilized. This approach…

Machine Learning · Computer Science 2025-03-11 Josimar Chire , Khalid Mahmood , Zhao Liang

The connectivity of a network contains information about the relationships between nodes, which can denote interactions, associations, or dependencies. We show that this information can be analyzed by measuring the uncertainty (and…

Physics and Society · Physics 2020-01-23 Brennan Klein , Erik Hoel

Comparing networks is essential for a number of downstream tasks, from clustering to anomaly detection. Despite higher-order interactions being critical for understanding the dynamics of complex systems, traditional approaches for network…

Physics and Society · Physics 2025-11-03 Helcio Felippe , Alec Kirkley , Federico Battiston

The retrieval abilities of spatially uniform attractor networks can be measured by the average overlap between patterns and neural states. We found that metric networks, with local connections, however, can carry information structured in…

Adaptation and Self-Organizing Systems · Physics 2016-08-16 David Dominguez , Kostadin Koroutchev , Eduardo Serrano , Francisco B. Rodríguez

Discovering and characterizing the large-scale topological features in empirical networks are crucial steps in understanding how complex systems function. However, most existing methods used to obtain the modular structure of networks…

Data Analysis, Statistics and Probability · Physics 2014-03-26 Tiago P. Peixoto

Networks can have various types of mesoscale structures. One type of mesoscale structure in networks is core-periphery structure, which consists of densely-connected core nodes and sparsely-connected peripheral nodes. The core nodes are…

Social and Information Networks · Computer Science 2025-06-17 Theodore Y. Faust , Mason A. Porter

From the perspective of network analysis, the ubiquitous networks are comprised of regular and irregular components, which makes uncovering the complexity of network structures to be a fundamental challenge. Exploring the regular…

Social and Information Networks · Computer Science 2018-08-30 Tao Wu , Shaojie Qiao , Xingping Xian , Xi-Zhao Wang , Wei Wang , Yanbing Liu
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