Related papers: Finding minimum Tucker submatrices
This paper proposes a scalable binary CUR low-rank approximation algorithm that leverages parallel selection of representative rows and columns within a deterministic framework. By employing a blockwise adaptive cross approximation…
The polynomial-time computability of the permanent over fields of characteristic 3 for k-semi-unitary matrices (i.e. square matrices such that the differences of their Gram matrices and the corresponding identity matrices are of rank k) in…
A graph has the unique path property UPP_n if there is a unique path of length n between any ordered pair of nodes. This paper reiterates Royle and MacKay's technique for constructing orderly algorithms. We wish to use this technique to…
In this paper we show how to combine two algorithmic techniques to obtain linear time algorithms for various optimization problems on graphs, and present a subroutine which will be useful in doing so. The first technique is iterative…
A lattice is a set of all the integer linear combinations of certain linearly independent vectors. One of the most important concepts on lattice is the successive minima which is of vital importance from both theoretical and practical…
Primary Cyclic matrices were used (but not named) by Holt and Rees in their version of Parker's MEAT-AXE algorithm to test irreducibility of finite matrix groups and algebras. They are matrices $X$ with at least one cyclic component in the…
In this paper, our goal is to characterize two graph classes based on the properties of minimal vertex (edge) separators. We first present a structural characterization of graphs in which every minimal vertex separator is a stable set. We…
In this paper we present a new family of discrete sequences having "random like" uniformly decaying auto-correlation properties. The new class of infinite length sequences are higher order chirps constructed using irrational numbers.…
We present an optimal, combinatorial 1-1/e approximation algorithm for monotone submodular optimization over a matroid constraint. Compared to the continuous greedy algorithm (Calinescu, Chekuri, Pal and Vondrak, 2008), our algorithm is…
Taking matrix as a synonym for a numerical function on the Cartesian product of two (in general, infinite) sets, a simple purely algebraic "reciprocity property" says that the set of rows spans a finite-dim space iff the set of columns does…
The identification of low-energy conformers for a given molecule is a fundamental problem in computational chemistry and cheminformatics. We assess here a conformer search that employs a genetic algorithm for sampling the low-energy segment…
In this paper we present Collaborative Low-Rank Subspace Clustering. Given multiple observations of a phenomenon we learn a unified representation matrix. This unified matrix incorporates the features from all the observations, thus…
The starting point for this work is an identity that relates the number of minimal matrices with prescribed 1-marginals and coefficient sequence to a linear combination of Kronecker coefficients. In this paper we provide a bijection that…
A popular way to define or characterize graph classes is via forbidden subgraphs or forbidden minors. These characterizations play a key role in graph theory, but they rarely lead to efficient algorithms to recognize these classes. In…
A fundamental algorithmic problem in computational biology is to find all subgraphs of a given type (superbubbles, snarls, and ultrabubbles) in a directed or bidirected input graph. These correspond to regions of genetic variation and are…
Minimizers and convolutional neural networks (CNNs) are two quite distinct popular techniques that have both been employed to analyze categorical biological sequences. At face value, the methods seem entirely dissimilar. Minimizers use…
Probe-level microarray data are usually stored in matrices, where the row and column correspond to array and probe, respectively. Scientists routinely summarize each array by a single index as the expression level of each probe set (gene).…
We introduce an infinite family of lower triangular matrices $\Gamma^{(s)}$, where $\gamma_{n,i}^s$ counts the standard Young tableaux on $n$ cells and with at most $s$ columns on a suitable subset of shapes. We show that the entries of…
This paper studies the problem of selecting a submatrix of a positive definite matrix in order to achieve a desired bound on the smallest eigenvalue of the submatrix. Maximizing this smallest eigenvalue has applications to selecting input…
Trace diagrams are structured graphs with edges labeled by matrices. Each diagram has an interpretation as a particular multilinear function. We provide a rigorous combinatorial definition of these diagrams using a notion of signed graph…