Related papers: Finding minimum Tucker submatrices

The min-rank of a graph was introduced by Haemers (1978) to bound the Shannon capacity of a graph. This parameter of a graph has recently gained much more attention from the research community after the work of Bar-Yossef et al. (2006). In…

Mining subgraphs with interesting structural properties from networks (or graphs) is a computationally challenging task. In this paper, we propose two algorithms for enumerating all connected induced subgraphs of a given cardinality from…

We investigate the existence of heavy columns in binary matrices with distinct rows. A column of an m x n binary matrix is called heavy if the number of ones in it is at least m/2. We introduce two recursive algorithms, A1 and A2, that…

A binary matrix satisfies the consecutive ones property (COP) if its columns can be permuted such that the ones in each row of the resulting matrix are consecutive. Equivalently, a family of sets F = {Q_1,..,Q_m}, where Q_i is subset of R…

A graph is circle if there is a family of chords in a circle such that two vertices are adjacent if the corresponding chords cross each other. There are diverse characterizations of circle graphs, many of them using the notions of local…

Bidimensionality is the most common technique to design subexponential-time parameterized algorithms on special classes of graphs, particularly planar graphs. The core engine behind it is a combinatorial lemma of Robertson, Seymour and…

We study the low rank approximation problem of any given matrix $A$ over $\mathbb{R}^{n\times m}$ and $\mathbb{C}^{n\times m}$ in entry-wise $\ell_p$ loss, that is, finding a rank-$k$ matrix $X$ such that $\|A-X\|_p$ is minimized. Unlike…

Given graphs $G$ and $H$, we propose a method to implicitly enumerate topological-minor-embeddings of $H$ in $G$ using decision diagrams. We show a useful application of our method to enumerating subgraphs characterized by forbidden…

Computing a shortest path between two nodes in an undirected unweighted graph is among the most basic algorithmic tasks. Breadth first search solves this problem in linear time, which is clearly also a lower bound in the worst case.…

Biclustering techniques have been widely used to identify homogeneous subgroups within large data matrices, such as subsets of genes similarly expressed across subsets of patients. Mining a max-sum sub-matrix is a related but distinct…

In standard clustering problems, data points are represented by vectors, and by stacking them together, one forms a data matrix with row or column cluster structure. In this paper, we consider a class of binary matrices, arising in many…

This paper presents the first combinatorial polynomial-time algorithm for minimizing submodular set functions, answering an open question posed in 1981 by Grotschel, Lovasz, and Schrijver. The algorithm employs a scaling scheme that uses a…

Many algorithms use data structures that maintain properties of matrices undergoing some changes. The applications are wide-ranging and include for example matchings, shortest paths, linear programming, semi-definite programming, convex…

We continue developing the theory around the twin-width of totally ordered binary structures, initiated in the previous paper of the series. We first introduce the notion of parity and linear minors of a matrix, which consists of…

In the general submatrix detection problem, the task is to detect the presence of a small $k \times k$ submatrix with entries sampled from a distribution $\mathcal{P}$ in an $n \times n$ matrix of samples from $\mathcal{Q}$. This…

We say a zero-one matrix $A$ avoids another zero-one matrix $P$ if no submatrix of $A$ can be transformed to $P$ by changing some ones to zeros. A fundamental problem is to study the extremal function $ex(n,P)$, the maximum number of…

Two matrices are said to be principal minor equivalent if they have equal corresponding principal minors of all orders. We give a characterization of principal minor equivalence and a deterministic polynomial time algorithm to check if two…

A problem of paramount importance in both pure (Restricted Invertibility problem) and applied mathematics (Feature extraction) is the one of selecting a submatrix of a given matrix, such that this submatrix has its smallest singular value…

Motif discovery is one of the most challenging problems in bioinformatics today. DNA sequence motifs are becoming increasingly important in analysis of gene regulation. Motifs are short, recurring patterns in DNA that have a biological…

In a recent paper, an algorithm has been presented for determining implications between a particular kind of category theoretic property represented by matrices -- the so called `matrix properties'. In this paper we extend this algorithm to…