Related papers: Non-standard discretization of biological models
We investigate the convergence of spatial discretizations for reaction-diffusion systems with mass-action law satisfying a detailed balance condition. Considering systems on the d-dimensional torus, we construct appropriate space-discrete…
In this work, we propose a structure-preserving discretisation for the recently studied Cahn-Hilliard-Biot system using conforming finite elements in space and problem-adapted explicit-implicit Euler time integration. We prove that the…
In this paper, we investigate numerically a diffuse interface model for the Navier-Stokes equation with fluid-fluid interface when the fluids have different densities \cite{Lowengrub1998}. Under minor reformulation of the system, we show…
This paper extends previous work on finitedifference schemes over staggered grids for infinite-dimensional port-Hamiltonian systems. In the one-dimensional setting, it generalizes the discretization approach originally developed for the…
A method, called beatification, is presented for rapidly extracting weakly nonlinear Hamiltonian systems that describe the dynamics near equilibria for systems possessing Hamiltonian form in terms of noncanonical Poisson brackets. The…
We show that any Lotka--Volterra tree-system associated with an $n$-vertex tree, as introduced in Quispel et al., J. Phys. A 56 (2023) 315201, preserves a rational measure. We also prove that the Kahan discretisation of these tree-systems…
We analyse the nonlinear Kuramoto--Sivashinsky equation to develop accurate discretisations modeling its dynamics on coarse grids. The analysis is based upon centre manifold theory so we are assured that the discretisation accurately models…
Stochastic models of diffusion with excluded-volume effects are used to model many biological and physical systems at a discrete level. The average properties of the population may be described by a continuum model based on partial…
We show that Kahan's discretization of quadratic vector fields is equivalent to a Runge--Kutta method. When the vector field is Hamiltonian on either a symplectic vector space or a Poisson vector space with constant Poisson structure, the…
The method of multiscale analysis is constructed for dicrete systems of evolution equations for which the problem is that of the far behavior of an input boundary datum. Discrete slow space variables are introduced in a general setting and…
A finite element discretization is developed for the Cai-Hu model, describing the formation of biological networks. The model consists of a non linear elliptic equation for the pressure $p$ and a non linear reaction-diffusion equation for…
The discretization approximation method commonly used to simulate the dynamics of quantum system coupled to the environment in continuum often suffers from the periodically partial recovery of initial state because of the effect of finite…
A 2-dimensional discrete Boltzmann model for combustion is presented. Mathematically, the model is composed of two coupled discrete Boltzmann equations for two species and a phenomenological equation for chemical reaction process.…
We build on a previous statistical model for distributed systems and formulate it in a way that the deterministic and stochastic processes within the system are clearly separable. We show how internal fluctuations can be analysed in a…
We consider the dynamics of an elastic continuum under large deformation but small strain. Such systems can be described by the equations of geometrically nonlinear elastodynamics in combination with the St. Venant-Kirchhoff material law.…
Systems composed of large numbers of interacting agents often admit an effective coarse-grained description in terms of a multidimensional stochastic dynamical system, driven by small-amplitude intrinsic noise. In applications to…
The Cahn-Hilliard equation and extensions, notably the Cahn-Hilliard-Darcy and Cahn-Hilliard-Navier-Stokes systems, provide widely used frameworks for coupling interfacial thermodynamics with flow. This review surveys the thermodynamic…
In this work we develop a discretisation method for the Brinkman problem that is uniformly well-behaved in all regimes (as identified by a local dimensionless number with the meaning of a friction coefficient) and supports general meshes as…
We propose a novel structure preserving discretization for viscous and resistive magnetohydrodynamics. We follow the recent line of work on discrete least action principle for fluid and plasma equation, incorporating the recent advances to…
A simple Hamiltonian modeling framework for general models in nonlinear optics is given. This framework is specialized to describe the Hamiltonian structure of electromagnetic phenomena in cubicly nonlinear optical media. The model has a…