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Oscillatory dynamics are ubiquitous in biological networks. Possible sources of oscillations are well understood in low-dimensional systems, but have not been fully explored in high-dimensional networks. Here we study large networks…

Disordered Systems and Neural Networks · Physics 2016-12-21 Célian Bimbard , Erwan Ledoux , Srdjan Ostojic

Key features of biological activity can often be captured by transitions between a finite number of semi-stable states that correspond to behaviors or decisions. We present here a broad class of dynamical systems that are ideal for modeling…

Dynamical Systems · Mathematics 2022-12-14 Megan Morrison , Lai-Sang Young

Boolean networks have been proposed as potentially useful models for genetic control. An important aspect of these networks is the stability of their dynamics in response to small perturbations. Previous approaches to stability have assumed…

Molecular Networks · Quantitative Biology 2015-05-13 Andrew Pomerance , Edward Ott , Michelle Girvan , Wolfgang Losert

We analyse a collection of empirical networks in a wide spectrum of disciplines and show that strong non-normality is ubiquitous in network science. Dynamical processes evolving on non-normal networks exhibit a peculiar behaviour, as…

Adaptation and Self-Organizing Systems · Physics 2018-11-09 Malbor Asllani , Renaud Lambiotte , Timoteo Carletti

We determine stability and attractor properties of random Boolean genetic network models with canalyzing rules for a variety of architectures. For all power law, exponential, and flat in-degree distributions, we find that the networks are…

Molecular Networks · Quantitative Biology 2007-05-23 Stuart Kauffman , Carsten Peterson , Björn Samuelsson , Carl Troein

Random walks represent an important tool for probing the structural and dynamical properties of networks and modeling transport and diffusion processes on networks. However, when individuals' movement becomes dictated by more complicated…

Pattern Formation and Solitons · Physics 2022-11-24 Per Sebastian Skardal

Stability, akin to reproducibility, is crucial in statistical analysis. This paper examines the stability of sparse network inference in high-dimensional graphical models, where selected edges should remain consistent across different…

Statistics Theory · Mathematics 2024-06-17 Emilie Devijver , Rémi Molinier , Mélina Gallopin

We consider diffeomorphisms $f$ with heteroclinic cycles associated to saddles $P$ and $Q$ of different indices. We say that a cycle of this type can be stabilized if there are diffeomorphisms close to $f$ with a robust cycle associated to…

Dynamical Systems · Mathematics 2015-05-27 Christian Bonatti , Lorenzo J. Diaz , Shin Kiriki

Dynamical patterns in complex networks of coupled oscillators are both of theoretical and practical interest, yet to fully reveal and understand the interplay between pattern emergence and network structure remains to be an outstanding…

Chaotic Dynamics · Physics 2017-04-03 Dongmei Song , Yafeng Wang , Xiang Gao , Shi-Xian Qu , Ying-Cheng Lai , Xingang Wang

We study the stationary states of networks consisting of weakly coupled bistable units. We prove the existence of a high multiplicity of stable steady states in networks with very general inter-unit dynamics. We present a method for…

patt-sol · Physics 2008-02-03 R S MacKay , J A Sepulchre

Genetic systems with multiple loci can have complex dynamics. For example, mean fitness need not always increase and stable cycling is possible. Here, we study the dynamics of a genetic system inspired by the molecular biology of…

Populations and Evolution · Quantitative Biology 2019-05-10 Timothy W. Russell , Matthew J. Russell , Francisco Úbeda , Vincent A. A. Jansen

In real-world networks the interactions between network elements are inherently time-delayed. These time-delays can not only slow the network but can have a destabilizing effect on the network's dynamics leading to poor performance. The…

Optimization and Control · Mathematics 2024-09-23 David Reber , Benjamin Webb

The dynamics of a multiplex heterogeneous network of oscillators is studied. Two types of similar models based on the Hodgkin-Huxley formalism are used as the basic elements of the networks. The first type model demonstrates bursting…

Disordered Systems and Neural Networks · Physics 2021-06-03 Nataliya Stankevich

The dynamical behavior of networked systems is expected to reflect the features of their coupling structure. Yet, symmetry-broken solutions often occur in symmetrically coupled networks. An example is provided by the so-called solitary…

Pattern Formation and Solitons · Physics 2022-11-30 Leonhard Schülen , Maria Mikhailenko , Everton S. Medeiros , Anna Zakharova

Robustness of network of networks (NON) has been studied only for dependency coupling (J.X. Gao et. al., Nature Physics, 2012) and only for connectivity coupling (E.A. Leicht and R.M. D Souza, arxiv:0907.0894). The case of network of n…

Physics and Society · Physics 2013-10-22 Gaogao Dong , Lixin Tian , Ruijin Du , H. Eugene Stanley

We consider a random network of nonlinear maps exhibiting a wide range of local dynamics, with the links having normally distributed interaction strengths. The stability of such a system is examined in terms of the asymptotic fraction of…

Adaptation and Self-Organizing Systems · Physics 2009-11-10 Sitabhra Sinha , Sudeshna Sinha

The relationship between network topology and system dynamics has significant implications for unifying our understanding of the interplay among metabolic, gene-regulatory, and ecosystem network architecures. Here we analyze the stability…

Populations and Evolution · Quantitative Biology 2015-06-17 Cameron Smith , Raymond S. Puzio , Aviv Bergman

Oscillator networks display intricate synchronization patterns. Determining their stability typically requires incorporating the symmetries of the network coupling. Going beyond analyses that appeal only to a network's automorphism group,…

Dynamical Systems · Mathematics 2020-12-14 J. Emenheiser , A. Salova , J. Snyder , J. P. Crutchfield , R. M. D'Souza

We describe a simple adaptive network of coupled chaotic maps. The network reaches a stationary state (frozen topology) for all values of the coupling parameter, although the dynamics of the maps at the nodes of the network can be…

Adaptation and Self-Organizing Systems · Physics 2015-06-19 V. Botella-Soler , P. Glendinning

For general networks of pulse-coupled oscillators, including regular, random, and more complex networks, we develop an exact stability analysis of synchronous states. As opposed to conventional stability analysis, here stability is…

Disordered Systems and Neural Networks · Physics 2009-11-07 Marc Timme , Fred Wolf , Theo Geisel