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Computer-aided molecular design (CAMD) studies quantitative structure-property relationships and discovers desired molecules using optimization algorithms. With the emergence of machine learning models, CAMD score functions may be replaced…

Computational Engineering, Finance, and Science · Computer Science 2023-12-07 Shiqiang Zhang , Juan S. Campos , Christian Feldmann , Frederik Sandfort , Miriam Mathea , Ruth Misener

Deep neural networks (DNNs), while increasingly deployed in many applications, struggle with robustness against anomalous and out-of-distribution (OOD) data. Current OOD benchmarks often oversimplify, focusing on single-object tasks and not…

Computer Vision and Pattern Recognition · Computer Science 2024-09-30 Debargha Ganguly , Debayan Gupta , Vipin Chaudhary

A nonlinear-manifold reduced order model (NM-ROM) is a great way of incorporating underlying physics principles into a neural network-based data-driven approach. We combine NM-ROMs with domain decomposition (DD) for efficient computation.…

Numerical Analysis · Mathematics 2023-12-04 Alejandro N. Diaz , Youngsoo Choi , Matthias Heinkenschloss

We show that for a number of parameterized problems for which only $2^{O(k)} n^{O(1)}$ time algorithms are known on general graphs, subexponential parameterized algorithms with running time $2^{O(k^{1-\frac{1}{1+\delta}} \log^2 k)}…

Data Structures and Algorithms · Computer Science 2016-10-26 Dániel Marx , Marcin Pilipczuk

The width measure treedepth, also known as vertex ranking, centered coloring and elimination tree height, is a well-established notion which has recently seen a resurgence of interest. Since graphs of bounded treedepth are more restricted…

Computational Complexity · Computer Science 2016-08-09 Li-Hsuan Chen , Felix Reidl , Peter Rossmanith , Fernando Sánchez Villaamil

Treewidth is a measure of how tree-like a graph is. It has many important algorithmic applications because many NP-hard problems on general graphs become tractable when restricted to graphs of bounded treewidth. Algorithms for problems on…

Data Structures and Algorithms · Computer Science 2020-06-03 Johan M. M. van Rooij

We present an on-line algorithm for maintaining a topological order of a directed acyclic graph as arcs are added, and detecting a cycle when one is created. Our algorithm takes O(m^{1/2}) amortized time per arc, where m is the total number…

Data Structures and Algorithms · Computer Science 2008-03-07 Bernhard Haeupler , Siddhartha Sen , Robert E. Tarjan

We present the design and analysis of a near linear-work parallel algorithm for solving symmetric diagonally dominant (SDD) linear systems. On input of a SDD $n$-by-$n$ matrix $A$ with $m$ non-zero entries and a vector $b$, our algorithm…

Data Structures and Algorithms · Computer Science 2011-11-09 Guy E. Blelloch , Anupam Gupta , Ioannis Koutis , Gary L. Miller , Richard Peng , Kanat Tangwongsan

There is increasing evidence suggesting neural networks' sensitivity to distribution shifts, so that research on out-of-distribution (OOD) generalization comes into the spotlight. Nonetheless, current endeavors mostly focus on Euclidean…

Machine Learning · Computer Science 2024-08-19 Qitian Wu , Hengrui Zhang , Junchi Yan , David Wipf

In spacetime dimensions of 4 (i.e., 3+1) and higher, topological orders exhibit spatially extended excitations like loops and membranes, which support diverse topological data characterizing braiding, fusion, and shrinking processes,…

High Energy Physics - Theory · Physics 2025-07-01 Yizhou Huang , Zhi-Feng Zhang , Peng Ye

This paper has proposed a Graph - semantic based conceptual model for semi-structured database system, called GOOSSDM, to conceptualize the different facets of such system in object oriented paradigm. The model defines a set of graph based…

Software Engineering · Computer Science 2012-02-22 Anirban Sarkar

Sentential decision diagrams (SDDs) introduced by Darwiche in 2011 are a promising representation type used in knowledge compilation. The relative succinctness of representation types is an important subject in this area. The aim of the…

Computational Complexity · Computer Science 2018-02-14 Beate Bollig , Matthias Buttkus

Graph neural networks (GNNs) have become compelling models designed to perform learning and inference on graph-structured data. However, little work has been done to understand the fundamental limitations of GNNs for scaling to larger…

Machine Learning · Computer Science 2023-10-27 Hyungeun Lee , Kijung Yoon

Given a complex graph database of node- and edge-attributed multi-graphs as well as associated metadata for each graph, how can we spot the anomalous instances? Many real-world problems can be cast as graph inference tasks where the graph…

Machine Learning · Computer Science 2023-11-21 Konstantinos Sotiropoulos , Lingxiao Zhao , Pierre Jinghong Liang , Leman Akoglu

Brain network analysis is vital for understanding the neural interactions regarding brain structures and functions, and identifying potential biomarkers for clinical phenotypes. However, widely used brain signals such as Blood Oxygen Level…

Machine Learning · Computer Science 2024-05-02 Kaiqiao Han , Yi Yang , Zijie Huang , Xuan Kan , Yang Yang , Ying Guo , Lifang He , Liang Zhan , Yizhou Sun , Wei Wang , Carl Yang

Graph embedding based retrieval has become one of the most popular techniques in the information retrieval community and search engine industry. The classical paradigm mainly relies on the flat Euclidean geometry. In recent years,…

Information Retrieval · Computer Science 2022-03-29 Zhirong Xu , Shiyang Wen , Junshan Wang , Guojun Liu , Liang Wang , Zhi Yang , Lei Ding , Yan Zhang , Di Zhang , Jian Xu , Bo Zheng

Out-of-distribution (OOD) generalization on graphs aims at dealing with scenarios where the test graph distribution differs from the training graph distributions. Compared to i.i.d. data like images, the OOD generalization problem on…

Machine Learning · Computer Science 2025-02-13 Song Wang , Zhen Tan , Yaochen Zhu , Chuxu Zhang , Jundong Li

We describe the second version (v2.0.0) of the code ADG that automatically (1) generates all valid off-diagonal Bogoliubov many-body perturbation theory diagrams at play in particle-number projected Bogoliubov many-body perturbation theory…

Nuclear Theory · Physics 2021-03-17 P. Arthuis , A. Tichai , J. Ripoche , T. Duguet

In the fields of statistics, machine learning, image science, and related areas, there is an increasing demand for decentralized collection or storage of large-scale datasets, as well as distributed solution methods. To tackle this…

Optimization and Control · Mathematics 2024-01-17 Bowen Li , Bin Shi

Moment-based distributionally robust optimization (DRO) provides an optimization framework to integrate statistical information with traditional optimization approaches. Under this framework, one assumes that the underlying joint…

Optimization and Control · Mathematics 2023-11-01 Shiyi Jiang , Jianqiang Cheng , Kai Pan , Zuo-Jun Max Shen