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We model proteins with intramolecular bonds, such as disulfide bridges, using the concept of bonded knots -- closed loops in three-dimensional space equipped with additional bonds that connect different segments of the knot. We extend the…

Geometric Topology · Mathematics 2025-02-27 Boštjan Gabrovšek , Matic Simonič

Given any unoriented link diagram, a group of new knot invariants are constructed. Each of them satisfies a generalized 4 term skein relation. The coefficients of each invariant is from a commutative ring. Homomorphisms and representations…

Geometric Topology · Mathematics 2010-04-14 Zhiqing Yang , Jifu Xiao

Twisted links are a generalization of virtual links. As virtual links correspond to abstract links on orientable surfaces, twisted links correspond to abstract links on (possibly non-orientable) surfaces. In this paper, we introduce the…

Geometric Topology · Mathematics 2016-01-12 Naoko Kamada , Seiichi Kamada

A. S. Lipson constructed two state models yielding the same classical link invariant obtained from the Kauffman polynomial $F(a,z)$. In this paper, we apply Lipson's state models to marked graph diagrams of surface-links, and observe when…

Geometric Topology · Mathematics 2014-11-24 Yewon Joung , Seiichi Kamada , Sang Youl Lee

We introduce three kinds of invariants of a virtual knot called the first, second, and third intersection polynomials. The definition is based on the intersection number of a pair of curves on a closed surface. The calculations of…

Geometric Topology · Mathematics 2022-01-26 Ryuji Higa , Takuji Nakamura , Yasutaka Nakanishi , Shin Satoh

In [14], the second named author constructed the bracket invariant [.] of virtual knots valued in pictures (linear combinations of virtual knot diagrams with some crossing information omitted), such that for many diagrams K, the following…

Geometric Topology · Mathematics 2017-01-24 Denis P. Ilyutko , Vassily O. Manturov

Kuperberg [Algebr. Geom. Topol. 3 (2003) 587-591] has shown that a virtual knot corresponds (up to generalized Reidemeister moves) to a unique embedding in a thichened surface of minimal genus. If a virtual knot diagram is equivalent to a…

Geometric Topology · Mathematics 2014-10-01 H. A. Dye , Louis H. Kauffman

F-polynomials for virtual knots were defined by Kaur, Prabhakar and Vesnin in 2018 using flat virtual knot invariants. These polynomials naturally generalize Kauffman's affine index polynomial and use smoothing in classical crossing of a…

Geometric Topology · Mathematics 2021-11-09 Amrendra Gill , Maxim Ivanov , Madeti Prabhakar , Andrei Vesnin

We introduce birack brackets, skein invariants of birack-colored framed classical and virtual knots and links with values in a commutative unital ring. The multiset of birack bracket values over the homset from a framed link's fundamental…

Geometric Topology · Mathematics 2026-02-09 Sam Nelson , Haoqi Tom Tang

Twisted graph diagrams are virtual graph diagrams with bars on edges. A bijection between abstract graph diagrams and twisted graph diagrams is constructed. Then a polynomial invariant of Yamada-type is developed which provides a lower…

Geometric Topology · Mathematics 2007-06-20 Jason Uhing

Checkerboard framings are an extension of checkerboard colorings for virtual links. According to checkerboard framings, in 2017, Dye obtained an independent invariant of virtual links: the cut point number. Checkerboard framings and cut…

Geometric Topology · Mathematics 2021-03-25 Qingying Deng

We produce a facial state sum on plane diagrams of a knot or a link which admits an invariant specialization under Polyak's recent set of generating of 4 Reidemeister moves. Thus an isotopy invariant of framed links is obtained. Each state…

Geometric Topology · Mathematics 2012-10-01 Sostenes Lins

We construct new invariant polynomial for long virtual knots. It is a generalization of Alexander polynomial. We designate it by $\zeta$ meaning an analogy with $\zeta$-polynomial for virtual links. A degree of $\zeta$-polynomial estimates…

Geometric Topology · Mathematics 2009-06-24 Afanasiev Denis

Given any oriented link diagram, one can construct knot invariants using skein relations. Usually such a skein relation contains three or four terms. In this paper, the author introduces several new ways to smooth a crossings, and uses a…

Geometric Topology · Mathematics 2017-03-20 Zhiqing Yang

We study surface knots in 4-space by using generic planar projections. These projections have fold points and cusps as their singularities and the image of the singular point set divides the plane into several regions. The width (or the…

Geometric Topology · Mathematics 2009-05-22 Yasushi Takeda

Kuperberg introduced web spaces for some Lie algebras which are generalizations of the Kauffman bracket skein module on a disk with marked points. We derive some formulas for $A_1$ and $A_2$ clasped web spaces by graphical calculus using…

Geometric Topology · Mathematics 2018-01-19 Wataru Yuasa

Topological gauge theories in four dimensions which admit surface operators provide a natural framework for realizing homological knot invariants. Every such theory leads to an action of the braid group on branes on the corresponding moduli…

High Energy Physics - Theory · Physics 2015-05-13 Sergei Gukov

The theory of welded and extended welded knots is a generalization of classical knot theory. Welded (resp. extended welded) knot diagrams include virtual crossings (resp. virtual crossings and wen marks) and are equivalent under an extended…

Geometric Topology · Mathematics 2018-09-18 N. Backes , M. Kaiser , T. Leafblad , E. I. C. Peterson , D. N. Yetter

Quandle coloring quivers are directed graph-valued invariants of oriented knots and links, defined using a choice of finite quandle $X$ and set $S\subset\mathrm{Hom}(X,X)$ of endomorphisms. From a quandle coloring quiver, a polynomial knot…

Geometric Topology · Mathematics 2020-10-02 Jieon Kim , Sam Nelson , Minju Seo

This paper describes a polynomial invariant of virtual knots that is defined in terms of an integer labeling of the virtual knot diagram. This labeling is seen to derive from an essentially unique structure of affine flat biquandle for flat…

Algebraic Topology · Mathematics 2014-07-25 Louis H. Kauffman