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These notes provide a short, focused introduction to modelling stochastic gene expression, including a derivation of the master equation, the recovery of deterministic dynamics, birth-and-death processes, and Langevin theory. The notes were…

Quantitative Methods · Quantitative Biology 2016-07-27 Peter S Swain

Self-training is a competitive approach in domain adaptive segmentation, which trains the network with the pseudo labels on the target domain. However inevitably, the pseudo labels are noisy and the target features are dispersed due to the…

Computer Vision and Pattern Recognition · Computer Science 2021-01-29 Pan Zhang , Bo Zhang , Ting Zhang , Dong Chen , Yong Wang , Fang Wen

In this paper, we explore connections between interpretable machine learning and learning theory through the lens of local approximation explanations. First, we tackle the traditional problem of performance generalization and bound the…

Machine Learning · Computer Science 2020-11-03 Jeffrey Li , Vaishnavh Nagarajan , Gregory Plumb , Ameet Talwalkar

These notes are based on a series of five lectures given during the summer school ``Interactions between Homotopy Theory and Algebra'' held at the University of Chicago in 2004.

K-Theory and Homology · Mathematics 2007-05-23 Henning Krause

We consider locally checkable labeling LCL problems in the LOCAL model of distributed computing. Since 2016, there has been a substantial body of work examining the possible complexities of LCL problems. For example, it has been established…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-11-14 Yi-Jun Chang

Recent genomic and bioinformatic advances have motivated the development of numerous random network models purporting to describe graphs of biological, technological, and sociological origin. The success of a model has been evaluated by how…

Molecular Networks · Quantitative Biology 2007-05-23 Manuel Middendorf , Etay Ziv , Carter Adams , Jen Hom , Robin Koytcheff , Chaya Levovitz , Gregory Woods , Linda Chen , Chris Wiggins

The paper relates character value of an irreducible representation of a compact connected Lie group at certain elements of finite order with the dimension of a representation on another group, up to some precise constants, which all have…

Representation Theory · Mathematics 2025-04-22 Santosh Nadimpalli , Santosha Pattanayak , Dipendra Prasad

Adversarial attacks have been widely studied for general classification tasks, but remain unexplored in the context of fine-grained recognition, where the inter-class similarities facilitate the attacker's task. In this paper, we identify…

Computer Vision and Pattern Recognition · Computer Science 2020-06-12 Krishna Kanth Nakka , Mathieu Salzmann

The antinuclear antibody detection with human epithelial cells is a popular approach for autoimmune diseases diagnosis. The manual evaluation demands time, effort and capital, and automation in screening can greatly aid the physicians in…

Computer Vision and Pattern Recognition · Computer Science 2018-10-31 Vibha Gupta , Arnav Bhavsar

Sometimes, it is very important to consider what type of setting is assumed when studying a mathematical object. For example, in Galois theory, properties can completely change if we study a field extension over $F_p$ instead of a field…

Rings and Algebras · Mathematics 2025-12-10 Eun H. Park

The fact that deep neural networks are susceptible to crafted perturbations severely impacts the use of deep learning in certain domains of application. Among many developed defense models against such attacks, adversarial training emerges…

Machine Learning · Computer Science 2020-07-13 Anh Bui , Trung Le , He Zhao , Paul Montague , Olivier deVel , Tamas Abraham , Dinh Phung

In this article, we show and discuss our experience in applying the flipped classroom method for teaching Conditional Random Fields in a Natural Language Processing course. We present the activities that we developed together with their…

Computers and Society · Computer Science 2021-05-18 Manex Agirrezabal

We study pattern formation for a variational model displaying competition between a local term penalizing interfaces and a non-local term favoring oscillations. By means of a $\Gamma$--convergence analysis, we show that as the parameter J…

Analysis of PDEs · Mathematics 2017-08-22 Michael Goldman , Eris Runa

Distance-based anomaly detection methods rely on compact in-distribution (ID) embeddings that are well separated from anomalies. However, conventional contrastive learning strategies often struggle to achieve this balance, either promoting…

Machine Learning · Computer Science 2026-02-02 Willian T. Lunardi , Abdulrahman Banabila , Dania Herzalla , Martin Andreoni

Those notes rest on the Samuel Eilenberg Lectures I gave at Columbia University, NY, in the fall 2022. I thank all the mathematicians who participated in their elaboration, directly or indirectly. They are meant to be published as a…

Algebraic Geometry · Mathematics 2023-03-13 Hélène Esnault

Learning representations unaffected by superficial characteristics is important to ensure that shifts in these characteristics at test time do not compromise downstream prediction performance. For instance, in healthcare applications, we…

Machine Learning · Computer Science 2025-07-28 Minghui Sun , Benjamin A. Goldstein , Matthew M. Engelhard

Unsupervised learning of latent variable models (LVMs) is widely used to represent data in machine learning. When such models reflect the ground truth factors and the mechanisms mapping them to observations, there is reason to expect that…

Machine Learning · Statistics 2023-01-23 Simon Buchholz , Michel Besserve , Bernhard Schölkopf

We introduce refined variants of the Local Learning Coefficient (LLC), a measure of model complexity grounded in singular learning theory, to study the development of internal structure in transformer language models during training. By…

Machine Learning · Computer Science 2024-10-07 George Wang , Jesse Hoogland , Stan van Wingerden , Zach Furman , Daniel Murfet

These are my notes for a talk at the The Tate Conjecture workshop at the American Institute of Mathematics in Palo Alto, CA, July 23--July 27, 2007, somewhat revised and expanded. The intent of the talk was to review what is known and to…

Algebraic Geometry · Mathematics 2007-10-11 James S. Milne

Various natural language processing tasks are structured prediction problems where outputs are constructed with multiple interdependent decisions. Past work has shown that domain knowledge, framed as constraints over the output space, can…

Computation and Language · Computer Science 2020-06-03 Xingyuan Pan , Maitrey Mehta , Vivek Srikumar
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