Related papers: A Search Procedure for Cyclic Subsets
Finite obstruction sets for lower ideals in the minor order are guaranteed to exist by the Graph Minor Theorem. It has been known for several years that, in principle, obstruction sets can be mechanically computed for most natural lower…
We announce two breakthrough results concerning important questions in the Theory of Computational Complexity. In this expository paper, a systematic and comprehensive geometric characterization of the Subset Sum Problem is presented. We…
We introduce an NP-complete graph decision problem, the "Multi-stage graph Simple Path" (abbr. MSP) problem, which focuses on determining the existence of specific "global paths" in a graph $G$. We show that the MSP problem can be solved in…
The dicycle transversal number t(D) of a digraph D is the minimum size of a dicycle transversal of D, i. e. a set T of vertices of D such that D-T is acyclic. We study the following problem: Given a digraph D, decide if there is a dicycle B…
I present a single algorithm which solves the clique problems, "What is the largest size clique?", "What are all the maximal cliques?" and the decision problem, "Does a clique of size k exist?" for any given graph in polynomial time. The…
Graphlet analysis is an approach to network analysis that is particularly popular in bioinformatics. We show how to set up a system of linear equations that relate the orbit counts and can be used in an algorithm that is significantly…
The minimum dominating set problem asks for a dominating set with minimum size. First, we determine some vertices contained in the minimum dominating set of a graph. By applying a particular scheme, we ensure that the resulting graph is…
The problem of finding multiple simple shortest paths in a weighted directed graph $G=(V,E)$ has many applications, and is considerably more difficult than the corresponding problem when cycles are allowed in the paths. Even for a single…
We give algorithms with running time $2^{O({\sqrt{k}\log{k}})} \cdot n^{O(1)}$ for the following problems. Given an $n$-vertex unit disk graph $G$ and an integer $k$, decide whether $G$ contains (1) a path on exactly/at least $k$ vertices,…
A hedge graph is a graph whose edge set has been partitioned into groups called hedges. Here we consider a generalization of the well-known \textsc{Cluster Deletion} problem, named \textsc{Hedge Cluster Deletion}. The task is to compute the…
We present fast and efficient randomized distributed algorithms to find Hamiltonian cycles in random graphs. In particular, we present a randomized distributed algorithm for the $G(n,p)$ random graph model, with number of nodes $n$ and…
Let $S$ be an independent set of a simple undirected graph $G$. Suppose that each vertex of $S$ has a token placed on it. The tokens are allowed to be moved, one at a time, by sliding along the edges of $G$, so that after each move, the…
We consider the problem of incremental cycle detection and topological ordering in a directed graph $G = (V, E)$ with $|V| = n$ nodes. In this setting, initially the edge-set $E$ of the graph is empty. Subsequently, at each time-step an…
A circulant graph H is defined on the set of vertices V=\left\{ 1,\ldots,n\right\} and edges E=\left\{ \left(i,j\right):\left|i-j\right|\equiv s\left(\textrm{mod}n\right),s\in S\right\} , where S\subseteq\left\{…
We consider a refinement of the partition function of graph homomorphisms and present a quasi-polynomial algorithm to compute it in a certain domain. As a corollary, we obtain quasi-polynomial algorithms for computing partition functions…
(I) We revisit the algorithmic problem of finding all triangles in a graph $G=(V,E)$ with $n$ vertices and $m$ edges. According to a result of Chiba and Nishizeki (1985), this task can be achieved by a combinatorial algorithm running in…
Decomposing an Eulerian graph into a minimum respectively maximum number of edge disjoint cycles is an NP-complete problem. We prove that an Eulerian graph decomposes into a unique number of cycles if and only if it does not contain two…
The square of a graph $G$, denoted by $G^2$, is obtained from $G$ by putting an edge between two distinct vertices whenever their distance is two. Then $G$ is called a square root of $G^2$. Deciding whether a given graph has a square root…
A {\em dominating set} of a graph $G=(V,E)$ is a subset of vertices $S\subseteq V$ such that every vertex $v\in V\setminus S$ has at least one neighbor in $S$. Finding a dominating set with the minimum cardinality in a connected graph…
We introduce a new concept of a subgraph class called a superbubble for analyzing assembly graphs, and propose an efficient algorithm for detecting it. Most assembly algorithms utilize assembly graphs like the de Bruijn graph or the overlap…