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Automatically generating compilable programs with (or without) natural language descriptions has always been a touchstone problem for computational linguistics and automated software engineering. Existing deep-learning approaches model code…

Computation and Language · Computer Science 2022-03-11 Xin Wang , Yasheng Wang , Yao Wan , Fei Mi , Yitong Li , Pingyi Zhou , Jin Liu , Hao Wu , Xin Jiang , Qun Liu

Probabilistic graphical models combine the graph theory and probability theory to give a multivariate statistical modeling. They provide a unified description of uncertainty using probability and complexity using the graphical model.…

Machine Learning · Statistics 2011-11-30 Yang Zhou

Machine learning in drug discovery has been focused on virtual screening of molecular libraries using discriminative models. Generative models are an entirely different approach that learn to represent and optimize molecules in a continuous…

Quantitative Methods · Quantitative Biology 2020-11-17 Matthew Ragoza , Tomohide Masuda , David Ryan Koes

We introduce a novel neural network architecture for encoding and synthesis of 3D shapes, particularly their structures. Our key insight is that 3D shapes are effectively characterized by their hierarchical organization of parts, which…

Graphics · Computer Science 2017-05-16 Jun Li , Kai Xu , Siddhartha Chaudhuri , Ersin Yumer , Hao Zhang , Leonidas Guibas

In traditional software programs, it is easy to trace program logic from variables back to input, apply assertion statements to block erroneous behavior, and compose programs together. Although deep learning programs have demonstrated…

Machine Learning · Computer Science 2021-10-27 Mike Wu , Noah Goodman , Stefano Ermon

Random graph models are frequently used as a controllable and versatile data source for experimental campaigns in various research fields. Generating such data-sets at scale is a non-trivial task as it requires design decisions typically…

Data Structures and Algorithms · Computer Science 2020-03-03 Manuel Penschuck , Ulrik Brandes , Michael Hamann , Sebastian Lamm , Ulrich Meyer , Ilya Safro , Peter Sanders , Christian Schulz

End-to-end deep neural networks have achieved remarkable success across various domains but are often criticized for their lack of interpretability. While post hoc explanation methods attempt to address this issue, they often fail to…

Machine Learning · Computer Science 2025-01-22 Weixin Chen , Simon Yu , Huajie Shao , Lui Sha , Han Zhao

This paper presents our approach to use refactoring techniques together with code generation. Refactoring is particularly useful if not only the generated classes but also the generator itself can be adapted in an automatic fashion. We have…

Software Engineering · Computer Science 2014-09-24 Holger Krahn , Bernhard Rumpe

Neural language models are a powerful tool to embed words into semantic vector spaces. However, learning such models generally relies on the availability of abundant and diverse training examples. In highly specialised domains this…

Computation and Language · Computer Science 2015-12-04 Stephanie L. Hyland , Theofanis Karaletsos , Gunnar Rätsch

Deep generative models have been successfully used to learn representations for high-dimensional discrete spaces by representing discrete objects as sequences and employing powerful sequence-based deep models. Unfortunately, these…

Initially developed for natural language processing (NLP), Transformers are now widely used for source code processing, due to the format similarity between source code and text. In contrast to natural language, source code is strictly…

Machine Learning · Computer Science 2021-06-25 Nadezhda Chirkova , Sergey Troshin

Deep generative models that learn from the distribution of natural protein sequences and structures may enable the design of new proteins with valuable functions. While the majority of today's models focus on generating either sequences or…

Biomolecules · Quantitative Biology 2024-10-03 Chentong Wang , Sarah Alamdari , Carles Domingo-Enrich , Ava Amini , Kevin K. Yang

The structure representation of data distribution plays an important role in understanding the underlying mechanism of generating data. In this paper, we propose nearest prime simplicial complex approaches (NSC) by utilizing persistent…

Machine Learning · Computer Science 2015-03-19 Junping Zhang , Ziyu Xie , Stan Z. Li

With the recent success of embeddings in natural language processing, research has been conducted into applying similar methods to code analysis. Most works attempt to process the code directly or use a syntactic tree representation,…

Machine Learning · Computer Science 2018-11-30 Tal Ben-Nun , Alice Shoshana Jakobovits , Torsten Hoefler

This paper describes a neural semantic parser that maps natural language utterances onto logical forms which can be executed against a task-specific environment, such as a knowledge base or a database, to produce a response. The parser…

Computation and Language · Computer Science 2018-08-14 Jianpeng Cheng , Siva Reddy , Vijay Saraswat , Mirella Lapata

Transcribing structured data into natural language descriptions has emerged as a challenging task, referred to as "data-to-text". These structures generally regroup multiple elements, as well as their attributes. Most attempts rely on…

Computation and Language · Computer Science 2019-12-23 Clément Rebuffel , Laure Soulier , Geoffrey Scoutheeten , Patrick Gallinari

Predictive coding is a message-passing framework initially developed to model information processing in the brain, and now also topic of research in machine learning due to some interesting properties. One of such properties is the natural…

Machine Learning · Computer Science 2022-12-12 Billy Byiringiro , Tommaso Salvatori , Thomas Lukasiewicz

Automatic code generation is to generate the program code according to the given natural language description. The current mainstream approach uses neural networks to encode natural language descriptions, and output abstract syntax trees…

Software Engineering · Computer Science 2022-02-16 Maosheng Zhong , Gen Liu , Hongwei Li , Jiangling Kuang , Jinshan Zeng , Mingwen Wang

Drug discovery aims to find novel compounds with specified chemical property profiles. In terms of generative modeling, the goal is to learn to sample molecules in the intersection of multiple property constraints. This task becomes…

Machine Learning · Computer Science 2020-07-06 Wengong Jin , Regina Barzilay , Tommi Jaakkola

The rapid advancements in large language models and generative artificial intelligence (AI) capabilities are making their broad application in the high-stakes testing context more likely. Use of generative AI in the scoring of constructed…

Computation and Language · Computer Science 2026-03-23 Jodi M. Casabianca , Daniel F. McCaffrey , Matthew S. Johnson , Naim Alper , Vladimir Zubenko
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