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In this paper, we investigate how stochastic reaction processes are affected by external perturbations. We describe an extension of the deterministic metabolic control analysis (MCA) to the stochastic regime. We introduce stochastic…

Quantitative Methods · Quantitative Biology 2009-08-21 Kyung Hyuk Kim , Herbert M. Sauro

In this paper, we investigate optimal control problems for Allen-Cahn equations with singular nonlinearities and a dynamic boundary condition involving singular nonlinearities and the Laplace-Beltrami operator. The approach covers both the…

Analysis of PDEs · Mathematics 2014-10-27 Pierluigi Colli , Jürgen Sprekels

The Poisson-Boltzmann equation offers an efficient way to study electrostatics in molecular settings. Its numerical solution with the boundary element method is widely used, as the complicated molecular surface is accurately represented by…

Numerical Analysis · Mathematics 2021-08-25 Stefan D. Search , Christopher D. Cooper , Elwin van't Wout

In this work we explore the compositions of non-stoichiometric intermediate phases formed by diffusion reactions: a mathematical framework is developed and tested against the specific case of Nb3Sn superconductors. In the first part, the…

Materials Science · Physics 2015-11-17 Xingchen Xu , Mike D. Sumption

We consider numerical approximations and error analysis for the Cahn-Hilliard equation with reaction rate dependent dynamic boundary conditions (P. Knopf et. al., arXiv, 2020). Based on the stabilized linearly implicit approach, a…

Numerical Analysis · Mathematics 2021-04-22 Xuelian Bao , Hui Zhang

We consider the numerical integration of Langevin equations for particles in a channel, in the presence of boundary conditions fixing the concentration values at the ends. This kind of boundary condition appears for instance when…

Computational Physics · Physics 2020-07-24 Laureano Ramírez-Piscina

This paper provides a theoretical framework of deriving the forward and backward Feynman-Kac equations for the distribution of functionals of the path of a particle undergoing both diffusion and chemical reaction. Very general forms of the…

Statistical Mechanics · Physics 2018-03-20 Ru Hou , Weihua Deng

We investigate a class of three-component reaction-diffusion systems subject to mass control and a newly introduced structural assumption, referred to as linear intermediate weighted sum condition. Under these hypotheses, we establish the…

Analysis of PDEs · Mathematics 2025-11-03 Redouane Douaifia , Salem Abdelmalek , Mokhtar Kirane

Systems consisting of a single ordinary differential equation coupled with one reaction-diffusion equation in a bounded domain and with the Neumann boundary conditions are studied in the case of particular nonlinearities from the…

Analysis of PDEs · Mathematics 2022-07-01 Szymon Cygan , Anna Marciniak-Czochra , Grzegorz Karch

A method to derive the corrections for the dispersion of the reaction plane at intermediate energies is proposed. The method is based on the correlated, non-isotropic Gaussian approximation. It allowed to construct the excitation function…

Nuclear Experiment · Physics 2007-05-23 J. Lukasik , W. Trautmann

We consider a nonlinear damped hyperbolic reaction-diffusion system in a bounded interval of the real line with homogeneous Neumann boundary conditions and we study the metastable dynamics of the solutions. Using an "energy approach"…

Analysis of PDEs · Mathematics 2019-11-06 Raffaele Folino

This work explores the influence of domain size of a non-compact two dimensional annular domain on the evolution of pattern formation that is modelled by an \textit{activator-depleted} reaction-diffusion system. A closed form expression is…

Dynamical Systems · Mathematics 2018-07-06 Wakil Sarfaraz , Anotida Madzvamuse

Controlling large particle systems in collective dynamics by a few agents is a subject of high practical importance, e.g., in evacuation dynamics. In this paper we study an instantaneous control approach to steer an interacting particle…

Optimization and Control · Mathematics 2020-01-29 Martin Burger , Rene Pinnau , Claudia Totzeck , Oliver Tse , Andreas Roth

We propose a general theoretical description of chemical reactions occurring on a catalytic surface with heterogeneous reactivity. The propagator of a diffusion-reaction process with eventual absorption on the heterogeneous partially…

Chemical Physics · Physics 2019-11-05 Denis S. Grebenkov

The role of dimensionality (Euclidean versus fractal), spatial extent, boundary effects and system topology on the efficiency of diffusion-reaction processes involving two simultaneously-diffusing reactants is analyzed. We present…

Statistical Mechanics · Physics 2009-11-10 Jonathan L. Bentz , John J. Kozak , E. Abad , G. Nicolis

In this work we examine a system consisting of a confined one-dimensional arrangement of atoms that we describe by using the 2-dimensional ${\mathbb C}P^{N-1}$ model, restricted to an interval and at finite temperature. We develop a method…

High Energy Physics - Theory · Physics 2019-10-21 Antonino Flachi , Guglielmo Fucci , Muneto Nitta , Satoshi Takada , Ryosuke Yoshii

In this article we formulate new models for coupled systems of bulk-surface reaction-diffusion equations on stationary volumes. The bulk reaction-diffusion equations are coupled to the surface reaction-diffusion equations through linear…

Analysis of PDEs · Mathematics 2015-06-23 Anotida Madzvamuse , Andy H. W. Chung , Chandrasekhar Venkataraman

Coupling between chemical fuel consumption and phase separation can lead to condensation at a nonequilibrium steady state, resulting in phase behaviors that are not described by equilibrium thermodynamics. Theoretical models of such…

Soft Condensed Matter · Physics 2025-05-23 Yongick Cho , William M. Jacobs

Phase-field model is a powerful mathematical tool to study the dynamics of interface and morphology changes in fluid mechanics and material sciences. However, numerically solving a phase field model for a real problem is a challenge task…

Numerical Analysis · Mathematics 2019-09-04 Lin Wang , Haijun Yu

An explicit output-feedback boundary feedback law is introduced that stabilizes an unstable linear constant-coefficient reaction-diffusion equation on an $n$-ball (which in 2-D reduces to a disk and in 3-D reduces to a sphere) using only…

Optimization and Control · Mathematics 2015-11-23 Rafael Vazquez , Miroslav Krstic