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We study a class of growth algorithms for directed graphs that are candidate models for the evolution of genetic regulatory networks. The algorithms involve partial duplication of nodes and their links, together with innovation of new…

Molecular Networks · Quantitative Biology 2007-05-23 D. V. Foster , S. A. Kauffman , J. E. S. Socolar

The social networks that infectious diseases spread along are typically clustered. Because of the close relation between percolation and epidemic spread, the behavior of percolation in such networks gives insight into infectious disease…

Quantitative Methods · Quantitative Biology 2009-05-14 Joel C Miller

Generative mechanisms which lead to empirically observed structure of networked systems from diverse fields like biology, technology and social sciences form a very important part of study of complex networks. The structure of many…

Physics and Society · Physics 2015-12-03 Snehal M. Shekatkar , G. Ambika

We use the configuration model to generate networks having a degree distribution that follows a $q$-exponential, $P_q(k)=(2-q)\lambda[1-(1-q)\lambda k]^{1/(q-1)}$, for arbitrary values of the parameters $q$ and $\lambda$. We study the…

We propose a local strategy for constructing scale-free networks of arbitrary degree distributions, based on the redirection method of Krapivsky and Redner [Phys. Rev. E 63, 066123 (2001)]. Our method includes a set of external parameters…

Disordered Systems and Neural Networks · Physics 2009-11-10 Hernan Rozenfeld , Daniel ben-Avraham

We study the effects of nonreciprocity and network structure on percolation. To this end, we investigate nonreciprocal random networks - directed networks for which the probability of a link occurring from node i to node j differs from the…

Statistical Mechanics · Physics 2025-10-07 Chanania Steinbock

We study the emergence of coherence in complex networks of mutually coupled non-identical elements. We uncover the precise dependence of the dynamical coherence on the network connectivity, on the isolated dynamics of the elements and the…

Adaptation and Self-Organizing Systems · Physics 2013-08-09 Tiago Pereira , Deniz Eroglu , G. B. Bagci , U. Tirnakli , Henrik J. Jensen

This paper expands the degree-based consideration of the preferential attachment growth process and applies five different connectivity criteria (node degree, clustering coefficient, betweenness centrality, closeness centrality, and…

Physics and Society · Physics 2020-01-16 Dimitrios Tsiotas

Community structures have been identified in various complex real-world networks, for example, communication, information, internet and shareholder networks. The scaling of community size distribution indicates the heterogeneity in the…

Physics and Society · Physics 2022-07-11 Qing Yao , Bingsheng Chen , Tim S. Evans , Kim Christensen

In this paper we examine the percolation properties of higher-order networks that have non-trivial clustering and subgraph-based assortative mixing (the tendency of vertices to connect to other vertices based on subgraph joint degree). Our…

Physics and Society · Physics 2022-10-07 Peter Mann , Lei Fang , Simon Dobson

First principle network models are crucial to make sense of the intricate topology of real complex networks. While modeling efforts have been quite successful in undirected networks, generative models for networks with asymmetric…

Physics and Society · Physics 2023-02-20 Antoine Allard , M. Ángeles Serrano , Marián Boguñá

Ever since the Barab\'{a}si-Albert (BA) scale-free network has been proposed, network modeling has been studied intensively in light of the network growth and the preferential attachment (PA). However, numerous real systems are featured…

Social and Information Networks · Computer Science 2025-11-25 Yuhan Li , Minyu Feng , Jürgen Kurths

Broadcasting algorithms are important building blocks of distributed systems. In this work we investigate the typical performance of the classical and well-studied push model. Assume that initially one node in a given network holds some…

Combinatorics · Mathematics 2010-02-19 Nikolaos Fountoulakis , Konstantinos Panagiotou

We investigate the degree distribution $P(k)$ and the clustering coefficient $C$ of the line graphs constructed on the Erd\"os-R\'enyi networks, the exponential and the scale-free growing networks. We show that the character of the degree…

Computational Physics · Physics 2015-05-13 Anna Manka-Krason , Advera Mwijage , Krzysztof Kulakowski

In this contribution we introduce local attachment as an universal network-joining protocol for peer-to-peer networks, social networks, or other kinds of networks. Based on this protocol nodes in a finite-size network dynamically create…

Statistical Mechanics · Physics 2007-06-04 Heiko Bauke , David Sherrington

We consider models of evolving networks $\{\mathcal{G}_n:n\geq 0\}$ modulated by two parameters: an attachment function $f:\mathbb{N}_0\to\mathbb{R}_+$ and a (possibly random) attachment sequence $\{m_i:i\geq 1\}$. Starting with a single…

Probability · Mathematics 2021-05-17 Sayan Banerjee , Shankar Bhamidi

We present an algorithm for generating random networks with arbitrary degree distribution and Clustering (frequency of triadic closure). We use this algorithm to generate networks with exponential, power law, and poisson degree…

Statistical Mechanics · Physics 2009-11-10 Erik Volz

Natural selection and random drift are competing phenomena for explaining the evolution of populations. Combining a highly fit mutant with a population structure that improves the odds that the mutant spreads through the whole population…

Populations and Evolution · Quantitative Biology 2009-08-14 Valmir C. Barbosa , Raul Donangelo , Sergio R. Souza

This paper introduces a method to generate hierarchically modular networks with prescribed node degree list by link switching. Unlike many existing network generating models, our method does not use link probabilities to achieve modularity.…

Other Computer Science · Computer Science 2009-07-05 Susan Khor

We present analytical results for the effect of preferential node deletion on the structure of networks that evolve via node addition and preferential attachment. To this end, we consider a preferential-attachment-preferential-deletion…

Physics and Society · Physics 2025-06-24 Barak Budnick , Ofer Biham , Eytan Katzav