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Many new particles, mostly hadrons, are produced in high energy collisions between atomic nuclei. The most popular models describing the hadron production process are based on the creation, evolution and decay of resonances, strings or…

High Energy Physics - Phenomenology · Physics 2023-03-14 Evgeny Andronov , Magdalena Kuich , Marek Gaździcki

Graph neural networks are widely used to learn global representations of graphs, which are then used for regression or classification tasks. Typically, the graphs in such data sets are connected, i.e. each training sample consists of a…

Computational Engineering, Finance, and Science · Computer Science 2022-11-01 Chen Shao , Zhou Chen , Pascal Friederich

Quantum measurements are inherently probabilistic and quantum theory often forbids to precisely predict the outcomes of simultaneous measurements. This phenomenon is captured and quantified through uncertainty relations. Although studied…

Quantum Physics · Physics 2023-10-30 Carlos de Gois , Kiara Hansenne , Otfried Gühne

I discuss the near-degeneracy between models of neutrino-nucleus interactions based on diverse assumptions, and analyze a specific example illustrating how the different reaction mechanisms taken into account, as well as the approximations…

Nuclear Theory · Physics 2016-12-06 Omar Benhar

We investigate Relational Graph Attention Networks, a class of models that extends non-relational graph attention mechanisms to incorporate relational information, opening up these methods to a wider variety of problems. A thorough…

Machine Learning · Computer Science 2019-04-12 Dan Busbridge , Dane Sherburn , Pietro Cavallo , Nils Y. Hammerla

The majority of nuclear reactions in astrophysics involve unstable nuclei which are not fully accessible by experiments yet. Therefore, there is high demand for reliable predictions of cross sections and reaction rates by theoretical means.…

Astrophysics · Physics 2010-12-13 T. Rauscher , R. D. Hoffman , S. E. Woosley , F. -K. Thielemann

We present a novel method for identifying a biochemical reaction network based on multiple sets of estimated reaction rates in the corresponding reaction rate equations arriving from various (possibly different) experiments. The current…

Applications · Statistics 2008-10-06 Gheorghe Craciun , Casian Pantea , Grzegorz A. Rempala

Negative muon-induced nuclear reactions play a critical role in a wide range of scientific and technological applications; however, comprehensive nuclear data for these processes remain unavailable. To address this gap, we have launched the…

Exponential random graph models (ERGMs) are widely used for modeling social networks observed at one point in time. However the computational difficulty of ERGM parameter estimation has limited the practical application of this class of…

Methodology · Statistics 2021-11-24 Alex Stivala , Garry Robins , Alessandro Lomi

Many areas of research are characterised by the deluge of large-scale highly-dimensional time-series data. However, using the data available for prediction and decision making is hampered by the current lag in our ability to uncover and…

Artificial Intelligence · Computer Science 2020-11-24 Zina Ibrahim , Honghan Wu , Richard Dobson

We present a systematic investigation using graph neural networks (GNNs) to model organic chemical reactions. To do so, we prepared a dataset collection of four ubiquitous reactions from the organic chemistry literature. We evaluate seven…

Machine Learning · Computer Science 2020-07-10 Serim Ryou , Michael R. Maser , Alexander Y. Cui , Travis J. DeLano , Yisong Yue , Sarah E. Reisman

The automated inference of physically interpretable (bio)chemical reaction network models from measured experimental data is a challenging problem whose solution has significant commercial and academic ramifications. It is demonstrated,…

Neural and Evolutionary Computing · Computer Science 2014-12-22 Dominic P. Searson , Mark J. Willis , Allen Wright

The aim of this work is to make available to the community a large collection of mass-action reaction networks of a given size for further research. The set is limited to what can be computed on a modern multi-core desktop in reasonable…

Molecular Networks · Quantitative Biology 2009-01-21 Anastasia C. Deckard , Frank T. Bergmann , Herbert M. Sauro

Yang, Wang, and Motter [Phys. Rev. Lett. 109, 258701 (2012)] analyzed a model for network observability transitions in which a sensor placed on a node makes the node and the adjacent nodes observable. The size of the connected components…

Physics and Society · Physics 2013-10-17 Takehisa Hasegawa , Taro Takaguchi , Naoki Masuda

Network models are used to study interconnected systems across many physical, biological, and social disciplines. Such models often assume a particular network-generating mechanism, which when fit to data produces estimates of…

Social and Information Networks · Computer Science 2022-01-17 Ryan E. Langendorf , Matthew G. Burgess

Rapid discovery of new reactions and molecules in recent years has been facilitated by the advancements in high throughput screening, accessibility to a much more complex chemical design space, and the development of accurate molecular…

Molecular Networks · Quantitative Biology 2023-03-28 Vipul Mann , Venkat Venkatasubramanian

The open issues in the development of models for the breakup of exotic nuclei and the link with the extraction of structure information from experimental data are reviewed. The question of the improvement of the description of exotic nuclei…

Nuclear Theory · Physics 2014-07-17 Pierre Capel

Network Repository (NR) is the first interactive data repository with a web-based platform for visual interactive analytics. Unlike other data repositories (e.g., UCI ML Data Repository, and SNAP), the network data repository…

Digital Libraries · Computer Science 2015-05-29 Ryan A. Rossi , Nesreen K. Ahmed

The purpose of the present paper is to clarify, as far as it is possible, the overall picture of experimental results in the field of non-conventional phenomena in nuclear matter published in scientific literature, accumulated in the last…

General Physics · Physics 2023-08-29 Stefano Bellucci , Fabio Cardone , Fabio Pistella

(Abridged) Modern studies and industrial applications related to the design, radiation protection, and reliability of nuclear facilities, medical applications, as well as space research and exploration are relying on extensive simulations…