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Shiga toxin-producing Escherichia coli O157: H7 is a food-borne pathogen and the major cause of hemorrhagic colitis. Pseudomonas is the genus most frequent psychrotrophic spoilage microorganisms present in milk. Two-species bacterial…

Populations and Evolution · Quantitative Biology 2019-05-08 E. J. Quinto , J. M. Marin , I. Caro , J. Mateo , D. W. Schaffner

Purpose - Functional bowel diseases, including irritable bowel syndrome, chronic constipation, and chronic diarrhea, are some of the most common diseases seen in clinical practice. Many patients describe a range of triggers for altered…

Machine Learning · Computer Science 2019-03-27 David Hachuel , Akshay Jha , Deborah Estrin , Alfonso Martinez , Kyle Staller , Christopher Velez

Biosensors are essential tools which have been traditionally used to monitor environmental pollution, detect the presence of toxic elements and biohazardous bacteria or virus in organic matter and biomolecules for clinical diagnostics. In…

Chemical Physics · Physics 2021-01-08 Aishwaryadev Banerjee , Swagata Maity , Carlos H. Mastrangelo

Escherichia coli has long been used as a model organism due to the extensive experimental characterization of its pathways and molecular components. Take chemotaxis as an example, which allows bacteria to sense and swim in response to…

Cell Behavior · Quantitative Biology 2015-12-09 Gabriele Micali , Robert G. Endres

Seismic images reconstruct subsurface reflectivity from field recordings, guiding exploration and reservoir monitoring. Gas chimneys are vertical anomalies caused by subsurface fluid migration. Understanding these phenomena is crucial for…

Computer Vision and Pattern Recognition · Computer Science 2026-03-25 Bao Truong , Quang Nguyen , Baoru Huang , Jinpei Han , Van Nguyen , Ngan Le , Minh-Tan Pham , Doan Huy Hien , Anh Nguyen

Bacterial infectious diseases are a major threat to human health. Timely and sensitive pathogenic bacteria detection is crucial in identifying the bacterial contaminations and preventing the spread of infectious diseases. Due to limitations…

Bacterial motility, and in particular repulsion or attraction towards specific chemicals, has been a subject of investigation for over 100 years, resulting in detailed understanding of bacterial chemotaxis and the corresponding sensory…

Biological Physics · Physics 2022-06-08 Jerko Rosko , Vincent Martinez , Wilson Poon , Teuta Pilizota

Anomalous surface enhanced Raman scattering (SERS) peaks are identified for liquid sample stored in polypropylene centrifuge tubes (PP tube) for months. We observed the unexpected Raman peaks during experiments for Thiamine Hydrochloride…

Quantitative Methods · Quantitative Biology 2016-10-26 Zhida Xu , Logan Liu

The MATHUSLA detector is a simple large-volume tracking detector to be located on the surface above one of the general-purpose experiments at the Large Hadron Collider. This detector was proposed in [1] to detect exotic, neutral, long-lived…

High Energy Physics - Phenomenology · Physics 2018-01-17 David Curtin , Michael E. Peskin

An accurate method for enumerating pathogen indicators, such as Escherichia coli (E. coli), and Salmonella spp. is important for assessing the safety of compost samples. This study aimed to determine the occurrence of pathogen indicators in…

Quantitative Methods · Quantitative Biology 2014-04-15 N. M. Sunar , D. I. Stewart , E. I. Stentiford , L. A. Flecther

In the face of growing needs for water and energy, a fundamental understanding of the environmental impacts of human activities becomes critical for managing water and energy resources, remedying water pollution, and making regulatory…

Signal Processing · Electrical Eng. & Systems 2019-08-30 Guanjie Zheng , Mengqi Liu , Tao Wen , Hongjian Wang , Huaxiu Yao , Susan L. Brantley , Zhenhui Li

Tuberculosis (TB) is a contagious bacterial airborne disease, and is one of the top 10 causes of death worldwide. According to the World Health Organization (WHO), around 1.8 billion people are infected with TB and 1.6 million deaths were…

Image and Video Processing · Electrical Eng. & Systems 2020-12-29 Chirath Dasanayakaa , Maheshi Buddhinee Dissanayake

Some microbial organisms are known to randomly slip into and out of hibernation, irrespective of environmental conditions [1]. In a (genetically) uniform population a typically very small subpopulation becomes metabolically inactive whereas…

Other Quantitative Biology · Quantitative Biology 2010-07-13 Ole Steuernagel , Daniel Polani

Pneumonia is a respiratory infection caused by bacteria, fungi, or viruses. It affects many people, particularly those in developing or underdeveloped nations with high pollution levels, unhygienic living conditions, overcrowding, and…

Image and Video Processing · Electrical Eng. & Systems 2024-06-24 Ayush Roy , Anurag Bhattacharjee , Diego Oliva , Oscar Ramos-Soto , Francisco J. Alvarez-Padilla , Ram Sarkar

Rapid identification of bacteria is essential to prevent the spread of infectious disease, help combat antimicrobial resistance, and improve patient outcomes. Raman optical spectroscopy promises to combine bacterial detection,…

Objective: Chagas disease is a parasitic infection that is endemic to South America, Central America, and, more recently, the U.S., primarily transmitted by insects. Chronic Chagas disease can cause cardiovascular diseases and digestive…

Currently, approximately $4$ billion people are infected by intestinal parasites worldwide. Diseases caused by such infections constitute a public health problem in most tropical countries, leading to physical and mental disorders, and even…

Computer Vision and Pattern Recognition · Computer Science 2021-01-19 Mateus Roder , Leandro A. Passos , Luiz Carlos Felix Ribeiro , Barbara Caroline Benato , Alexandre Xavier Falcão , João Paulo Papa

Early detection and identification of pathogenic bacteria such as Escherichia coli (E. coli) is an essential task for public health. The conventional culture-based methods for bacterial colony detection usually take >24 hours to get the…

The near-surface swimming patterns of bacteria are strongly determined by the hydrodynamic interactions between bacteria and the surface, which trap bacteria in smooth circular trajectories that lead to inefficient surface exploration.…

Mathematical epidemiological models have a broad use, including both qualitative and quantitative applications. With the increasing availability of data, large-scale quantitative disease spread models can nowadays be formulated. Such models…

Methodology · Statistics 2021-08-10 Stefan Engblom , Robin Eriksson , Stefan Widgren
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