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The EM procedure is a principal tool for parameter estimation in the hidden Markov models. However, applications replace EM by Viterbi extraction, or training (VT). VT is computationally less intensive, more stable and has more of an…

Computation · Statistics 2008-12-18 Jüri Lember , Alexey Koloydenko

We study modifications of the Viterbi Training (VT) algorithm to estimate emission parameters in Hidden Markov Models (HMM) in general, and in mixure models in particular. Motivated by applications of VT to HMM that are used in speech…

Statistics Theory · Mathematics 2007-06-13 J. Lember , A. Koloydenko

VT (Viterbi training), or hard EM, is an efficient way of parameter learning for probabilistic models with hidden variables. Given an observation $y$, it searches for a state of hidden variables $x$ that maximizes $p(x,y \mid \theta)$ by…

Artificial Intelligence · Computer Science 2020-02-19 Taisuke Sato , Keiichi Kubota

Background: Hidden Markov models (HMM) are powerful machine learning tools successfully applied to problems of computational Molecular Biology. In a predictive task, the HMM is endowed with a decoding algorithm in order to assign the most…

Biomolecules · Quantitative Biology 2007-05-23 Piero Fariselli , Pier Luigi Martelli , Rita Casadio

We consider the maximum likelihood (Viterbi) alignment of a hidden Markov model (HMM). In an HMM, the underlying Markov chain is usually hidden and the Viterbi alignment is often used as the estimate of it. This approach will be referred to…

Probability · Mathematics 2010-12-14 Kristi Kuljus , Jüri Lember

The article studies different methods for estimating the Viterbi path in the Bayesian framework. The Viterbi path is an estimate of the underlying state path in hidden Markov models (HMMs), which has a maximum posterior probability (MAP).…

Computation · Statistics 2019-05-14 Jüri Lember , Dario Gasbarra , Alexey Koloydenko , Kristi Kuljus

In this paper, we introduce the on-line Viterbi algorithm for decoding hidden Markov models (HMMs) in much smaller than linear space. Our analysis on two-state HMMs suggests that the expected maximum memory used to decode sequence of length…

Data Structures and Algorithms · Computer Science 2010-01-25 Rastislav Šrámek , Broňa Brejová , Tomáš Vinař

We investigate a novel modeling approach for end-to-end neural network training using hidden Markov models (HMM) where the transition probabilities between hidden states are modeled and learned explicitly. Most contemporary…

Machine Learning · Computer Science 2023-10-10 Daniel Mann , Tina Raissi , Wilfried Michel , Ralf Schlüter , Hermann Ney

To estimate the emission parameters in hidden Markov models one commonly uses the EM algorithm or its variation. Our primary motivation, however, is the Philips speech recognition system wherein the EM algorithm is replaced by the Viterbi…

Statistics Theory · Mathematics 2007-09-17 J. Lember , A. Koloydenko

Hidden Markov models are traditionally decoded by the Viterbi algorithm which finds the highest probability state path in the model. In recent years, several limitations of the Viterbi decoding have been demonstrated, and new algorithms…

Data Structures and Algorithms · Computer Science 2013-08-06 Michal Nánási , Tomáš Vinař , Broňa Brejová

Since the early days of digital communication, Hidden Markov Models (HMMs) have now been routinely used in speech recognition, processing of natural languages, images, and in bioinformatics. An HMM $(X_i,Y_i)_{i\ge 1}$ assumes observations…

Statistics Theory · Mathematics 2009-02-06 J. Lember , A. Koloydenko

Hidden Markov models (HMMs) are one of the most widely used statistical methods for analyzing sequence data. However, the reporting of output from HMMs has largely been restricted to the presentation of the most-probable (MAP) hidden state…

Methodology · Statistics 2015-05-01 Michalis K. Titsias , Christopher Yau , Christopher C. Holmes

Background: Hidden Markov models are widely employed by numerous bioinformatics programs used today. Applications range widely from comparative gene prediction to time-series analyses of micro-array data. The parameters of the underlying…

Quantitative Methods · Quantitative Biology 2012-10-18 Tin Yin Lam , Irmtraud M. Meyer

In this paper, we present a novel algorithm for the maximum a posteriori decoding (MAPD) of time-homogeneous Hidden Markov Models (HMM), improving the worst-case running time of the classical Viterbi algorithm by a logarithmic factor. In…

Machine Learning · Computer Science 2015-12-14 Massimo Cairo , Gabriele Farina , Romeo Rizzi

An algorithm used to extract HMM parameters is revisited. Most parts of the extraction process are taken from implemented Hidden Markov Toolkit (HTK) program under name HInit. The algorithm itself shows a few variations compared to another…

Sound · Computer Science 2019-08-09 Zulkarnaen Hatala , Victor Puturuhu

Lane determination and lane sequence determination are important components for many Connected and Automated Vehicle (CAV) applications. Lane determination has been solved using Hidden Markov Model (HMM) among other methods. The existing…

Robotics · Computer Science 2025-05-13 Mike Stas , Wang Hu , Jay A. Farrell

Hidden Markov models (HMMs) are popular models to identify a finite number of latent states from sequential data. However, fitting them to large data sets can be computationally demanding because most likelihood maximization techniques…

We show that maximum entropy (maxent) models can be modeled with certain kinds of HMMs, allowing us to construct maxent models with hidden variables, hidden state sequences, or other characteristics. The models can be trained using the…

Artificial Intelligence · Computer Science 2013-01-07 Joshua Goodman

Motivated by the progress made by large language models (LLMs), we introduce the framework of verbalized machine learning (VML). In contrast to conventional machine learning (ML) models that are typically optimized over a continuous…

Machine Learning · Computer Science 2025-02-17 Tim Z. Xiao , Robert Bamler , Bernhard Schölkopf , Weiyang Liu

Hidden semi-Markov models (HSMMs) are latent variable models which allow latent state persistence and can be viewed as a generalization of the popular hidden Markov models (HMMs). In this paper, we introduce a novel spectral algorithm to…

Machine Learning · Statistics 2016-03-01 Igor Melnyk , Arindam Banerjee
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