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Recent efforts to enable visual navigation using large language models have mainly focused on developing complex prompt systems. These systems incorporate instructions, observations, and history into massive text prompts, which are then…

Computer Vision and Pattern Recognition · Computer Science 2023-11-07 Yao-Hung Hubert Tsai , Vansh Dhar , Jialu Li , Bowen Zhang , Jian Zhang

We introduce Controller-Embedded Language Model Interactions (CELI), a framework that integrates control logic directly within language model (LM) prompts, facilitating complex, multi-stage task execution. CELI addresses limitations of…

Generative text-to-image models have gained great popularity among the public for their powerful capability to generate high-quality images based on natural language prompts. However, developing effective prompts for desired images can be…

Artificial Intelligence · Computer Science 2023-11-02 Yingchaojie Feng , Xingbo Wang , Kam Kwai Wong , Sijia Wang , Yuhong Lu , Minfeng Zhu , Baicheng Wang , Wei Chen

Molecular dynamics (MD) simulation is essential for various scientific domains but computationally expensive. Learning-based force fields have made significant progress in accelerating ab-initio MD simulation but are not fast enough for…

Machine Learning · Computer Science 2023-08-29 Xiang Fu , Tian Xie , Nathan J. Rebello , Bradley D. Olsen , Tommi Jaakkola

Vibe Coding (VC) is a form of software development assisted by generative AI, in which developers describe the intended functionality or logic via natural language prompts, and the AI system generates the corresponding source code. VC can…

Software Engineering · Computer Science 2025-12-16 Muhammad Waseem , Aakash Ahmad , Kai-Kristian Kemell , Jussi Rasku , Sami Lahti , Kalle Mäkelä , Pekka Abrahamsson

This computational experiment demonstrates that chain melting in lipids is a molecular process. BOMD is certainly the best method to reproduce such dynamics properties, since the electronic contributions to the various molecular structures…

Process mining extends far beyond process discovery and conformance checking, and also provides techniques for bottleneck analysis and organizational mining. However, these techniques are mostly backward-looking. PMSD is a web application…

Software Engineering · Computer Science 2020-10-05 Mahsa Pourbafrani , Wil M. P. van der Aalst

Understanding protein dynamics are essential for deciphering protein functional mechanisms and developing molecular therapies. However, the complex high-dimensional dynamics and interatomic interactions of biological processes pose…

Quantitative Methods · Quantitative Biology 2025-05-15 Tiexin Qin , Mengxu Zhu , Chunyang Li , Terry Lyons , Hong Yan , Haoliang Li

Procedural materials, represented as functional node graphs, are ubiquitous in computer graphics for photorealistic material appearance design. They allow users to perform intuitive and precise editing to achieve desired visual appearances.…

Computer Vision and Pattern Recognition · Computer Science 2025-02-19 Beichen Li , Rundi Wu , Armando Solar-Lezama , Changxi Zheng , Liang Shi , Bernd Bickel , Wojciech Matusik

Molecular dynamics (MD) simulations are essential tools in computational chemistry and drug discovery, offering crucial insights into dynamic molecular behavior. However, their utility is significantly limited by substantial computational…

Chemical Physics · Physics 2025-09-04 Bin Feng , Jiying Zhang , Xinni Zhang , Zijing Liu , Yu Li

The recent surge in artificial intelligence, particularly in multimodal processing technology, has advanced human-computer interaction, by altering how intelligent systems perceive, understand, and respond to contextual information (i.e.,…

Chemical reasoning inherently integrates visual, textual, and symbolic modalities, yet existing benchmarks rarely capture this complexity, often relying on simple image-text pairs with limited chemical semantics. As a result, the actual…

Artificial Intelligence · Computer Science 2025-11-25 Zhiyuan Huang , Baichuan Yang , Zikun He , Yanhong Wu , Fang Hongyu , Zhenhe Liu , Lin Dongsheng , Bing Su

This paper presents a molecular mechanics study using a molecular dynamics software (NAMD) coupled to virtual reality (VR) techniques for intuitive Bio-NanoRobotic prototyping. Using simulated Bio-Nano environments in VR, the operator can…

Biological Physics · Physics 2007-08-15 Mustapha Hamdi , Gaurav Sharma , A. Ferreira , Constantinos Mavroidis

Generating molecular graphs with desired chemical properties driven by deep graph generative models provides a very promising way to accelerate drug discovery process. Such graph generative models usually consist of two steps: learning…

Machine Learning · Statistics 2020-06-19 Chengxi Zang , Fei Wang

Multimodal large language models (MLLMs) have emerged as pivotal tools in enhancing human-computer interaction. In this paper we focus on the application of MLLMs in the field of graphical user interface (GUI) elements structuring, where…

Computer Vision and Pattern Recognition · Computer Science 2025-09-03 Yi Xu , Yesheng Zhang , Jiajia Liu , Jingdong Chen

Graph rewrite systems are powerful tools to model and study complex problems in various fields of research. Their successful application to chemical reaction modelling on a molecular level was shown but no appropriate and simple system is…

Mathematical Software · Computer Science 2013-04-05 Martin Mann , Heinz Ekker , Christoph Flamm

Molecular dynamics (MD) has become a powerful tool for studying biophysical systems, due to increasing computational power and availability of software. Although MD has made many contributions to better understanding these complex…

Computational Physics · Physics 2019-09-27 Yihang Wang , Joao Marcelo Lamim Ribeiro , Pratyush Tiwary

Large Language Models are transforming software engineering, yet prompt management in practice remains ad hoc, hindering reliability, reuse, and integration into industrial workflows. We present Prompt-with-Me, a practical solution for…

Software Engineering · Computer Science 2025-09-23 Ziyou Li , Agnia Sergeyuk , Maliheh Izadi

Large vision-language models (VLMs) have shown promising capabilities in scene understanding, enhancing the explainability of driving behaviors and interactivity with users. Existing methods primarily fine-tune VLMs on on-board multi-view…

Computer Vision and Pattern Recognition · Computer Science 2025-08-19 Nan Song , Bozhou Zhang , Xiatian Zhu , Jiankang Deng , Li Zhang

Simulating particle dynamics with high fidelity is crucial for solving real-world interaction and control tasks involving liquids in design, graphics, and robotics. Recently, data-driven approaches, particularly those based on graph neural…

Machine Learning · Computer Science 2025-12-01 Niteesh Midlagajni , Constantin A. Rothkopf